Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 1.2e-183 646.4 316 100.0
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.0e-171 606.7 316 94.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 2.3e-171 605.5 324 93.5
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.6e-169 599.4 316 94.6
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 2.1e-148 529.3 315 83.2
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 2.3e-147 525.8 317 81.1
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 3.9e-147 525.0 317 81.4
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 5.2e-147 524.6 316 80.7
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 5.7e-146 521.2 314 80.3
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 9.7e-146 520.4 317 80.4
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 1.3e-145 520.0 314 80.6
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 4.8e-145 518.1 314 79.3
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 8.2e-145 517.3 314 79.3
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 1.8e-144 516.2 317 81.1
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 1.0e-139 500.4 316 75.0
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 1.7e-137 493.0 319 76.8
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 2.8e-137 492.3 316 74.7
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 3.7e-137 491.9 317 75.1
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 1.8e-136 489.6 317 76.0
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 4.5e-135 485.0 318 76.4
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.3e-134 483.4 316 72.8
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 1.7e-134 483.0 318 76.1
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.9e-134 482.3 317 72.9
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 3.8e-134 481.9 317 72.9
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 1.1e-133 480.3 315 72.7
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.5e-133 479.9 317 71.9
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 2.5e-133 479.2 316 72.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 4.2e-133 478.4 318 74.8
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.1e-132 476.1 318 74.8
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 4.7e-132 474.9 317 71.0
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 6.1e-132 474.6 317 74.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 1.4e-131 473.4 317 73.2
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 3.0e-131 472.2 316 72.5
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 5.2e-131 471.5 321 72.9
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 6.8e-131 471.1 311 72.7
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 8.8e-131 470.7 318 72.3
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 8.8e-131 470.7 317 70.7
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.5e-130 469.9 313 71.6
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 2.2e-129 466.1 318 70.8
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.8e-129 465.7 316 71.2
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.8e-129 465.7 316 71.2
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 3.1e-128 462.2 316 72.2
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.6e-127 459.9 316 69.6
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 2.7e-127 459.1 387 62.5
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 3.5e-127 458.8 317 72.9
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 4.5e-127 458.4 314 72.3
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 5.9e-127 458.0 316 70.6
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 5.9e-127 458.0 316 69.6
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 2.9e-126 455.7 349 65.0
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 5.0e-126 454.9 317 71.9
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 6.6e-126 454.5 317 71.3
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 1.9e-125 453.0 317 72.2
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.3e-125 452.2 317 72.2
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 2.1e-124 449.5 313 70.9
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 3.6e-124 448.7 313 70.9
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.7e-124 448.4 318 69.5
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.0e-124 447.6 318 68.9
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 4.0e-123 445.3 313 69.6
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 8.9e-123 444.1 313 70.0
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 8.9e-123 444.1 319 68.0
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 8.9e-123 444.1 318 67.9
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 1.5e-122 443.4 318 68.2
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 1.5e-122 443.4 334 67.1
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 2.0e-122 443.0 284 74.3
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 2.6e-122 442.6 312 70.2
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 3.4e-122 442.2 287 74.9
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 7.5e-122 441.0 315 67.3
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.3e-121 440.3 313 69.6
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 1.7e-121 439.9 314 70.7
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 2.2e-121 439.5 312 69.6
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 2.8e-121 439.1 313 69.3
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 4.9e-121 438.3 318 67.9
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 6.3e-121 438.0 312 69.2
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 6.3e-121 438.0 313 69.3
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.1e-120 437.2 318 68.6
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 1.1e-120 437.2 307 70.7
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 1.4e-120 436.8 313 65.8
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.8e-120 436.4 318 67.6
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.8e-120 436.4 318 67.3
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 3.2e-120 435.6 316 67.7
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.6e-119 433.3 318 68.2
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 4.5e-119 431.8 314 68.8
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 7.8e-119 431.0 317 69.4
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 2.3e-118 429.5 319 66.8
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 2.3e-118 429.5 319 66.8
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 8.6e-118 427.6 319 66.5
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.3e-117 425.6 313 63.9
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.6e-116 423.3 313 65.8
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.8e-115 419.9 338 59.5
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 3.1e-115 419.1 313 64.5
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 2.0e-114 416.4 314 66.9
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.4e-112 410.2 351 60.4
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 1.6e-111 406.8 316 65.8
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 6.0e-111 404.8 305 65.6
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.0e-110 404.1 284 70.4
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 3.0e-110 402.5 314 60.8
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 8.6e-110 401.0 313 63.6
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 7.5e-106 387.9 252 73.8
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 4.1e-104 382.1 273 68.9
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 9.2e-104 380.9 317 59.6
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 1.1e-101 374.0 248 72.6
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 3.4e-98 362.5 259 69.1
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.3e-94 350.5 314 56.7
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 8.6e-94 347.8 249 66.3
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.1e-93 347.4 316 57.3
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 1.2e-90 337.4 229 72.5
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 1.3e-86 323.9 303 54.1
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 1.9e-85 320.1 308 51.0
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 1.6e-84 317.0 219 69.4
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 2.3e-78 296.6 298 50.3
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 8.7e-78 294.7 300 51.3
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 2.2e-65 253.4 298 44.0
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 4.1e-59 232.6 147 74.1
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.9e-56 223.8 145 73.8
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 2.2e-52 210.3 327 42.2
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 2.8e-52 209.9 188 53.2
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 5.3e-51 205.7 297 39.1
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 5.0e-49 199.1 164 57.9
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 7.4e-45 185.3 96 94.8
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 1.8e-43 180.6 97 92.8
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 5.0e-41 172.6 152 59.9
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 6.7e-38 162.2 149 57.0
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.5e-37 161.0 192 49.5
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 2.6e-29 133.7 100 60.0
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.7e-23 112.8 66 78.8
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 4.1e-19 99.8 63 71.4
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 7.2e-16 89.0 75 56.0
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 6.1e-15 85.9 64 62.5
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.0e-14 85.1 59 66.1
Psat6g049160 Pisum sativum HOM05D006018 ORTHO05D320225 4.0e-06 56.6 37 73.0


User provided reference genes

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