Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.5e-99 367.1 346 100.0
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.0e-95 354.4 350 97.7
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 8.6e-87 324.7 174 93.1
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 2.5e-86 323.2 174 92.5
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 5.6e-86 322.0 174 92.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.3e-84 316.6 173 93.1
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 4.0e-84 315.8 170 92.4
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 2.6e-83 313.2 173 90.8
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 9.8e-83 311.2 173 89.6
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 2.2e-82 310.1 174 89.1
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 3.7e-82 309.3 172 91.3
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.6e-80 302.4 174 87.4
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.0e-79 299.7 174 87.4
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 3.9e-79 299.3 174 86.8
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 5.0e-79 298.9 174 86.8
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.1e-78 297.7 174 86.2
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 1.1e-78 297.7 173 85.0
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 2.5e-78 296.6 174 85.1
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 4.3e-78 295.8 173 86.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 4.3e-78 295.8 174 85.6
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 5.6e-78 295.4 172 87.2
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 3.6e-77 292.7 174 83.9
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 4.7e-77 292.4 172 84.9
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 8.0e-77 291.6 169 86.4
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.1e-76 291.2 174 83.3
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.1e-76 291.2 174 83.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.8e-76 290.4 174 84.5
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.3e-76 290.0 174 85.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 3.1e-76 289.7 174 83.3
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 6.8e-76 288.5 174 82.8
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 8.9e-76 288.1 174 82.8
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 2.0e-75 287.0 173 86.1
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 3.4e-75 286.2 172 82.6
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 5.8e-75 285.4 170 83.5
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 5.8e-75 285.4 172 83.7
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 5.8e-75 285.4 174 82.8
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 7.5e-75 285.0 172 83.7
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 9.8e-75 284.6 169 84.0
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 9.8e-75 284.6 174 83.9
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 9.8e-75 284.6 174 82.2
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.7e-74 283.9 174 82.8
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.2e-74 283.5 172 83.1
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 2.9e-74 283.1 174 81.0
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 3.7e-74 282.7 172 83.7
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.9e-74 282.3 169 83.4
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 4.9e-74 282.3 172 82.0
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 3.2e-73 279.6 171 83.6
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 6.0e-72 275.4 167 83.2
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 7.8e-72 275.0 174 79.9
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.0e-71 274.6 171 80.1
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 5.1e-71 272.3 174 77.0
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.9e-70 270.4 150 92.7
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 1.9e-70 270.4 174 78.7
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 4.3e-70 269.2 174 78.7
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.6e-70 268.9 170 80.0
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.6e-70 268.9 170 80.0
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 7.3e-70 268.5 172 82.0
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 7.3e-70 268.5 174 78.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.8e-68 263.8 174 74.7
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.8e-68 263.8 174 74.7
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 1.5e-67 260.8 174 74.1
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 1.5e-67 260.8 174 74.1
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 1.5e-67 260.8 174 74.1
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 1.5e-67 260.8 174 74.1
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 1.5e-67 260.8 174 74.1
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 3.4e-67 259.6 174 73.6
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 3.4e-67 259.6 172 78.5
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 5.8e-67 258.8 168 78.0
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.7e-66 257.3 172 75.0
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 2.9e-66 256.5 221 64.7
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.9e-66 256.5 171 75.4
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 4.9e-66 255.8 174 72.4
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.4e-65 253.4 206 67.5
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 3.2e-65 253.1 174 71.8
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 3.2e-65 253.1 174 71.8
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 1.6e-64 250.8 174 74.7
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 1.0e-63 248.1 172 74.4
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 1.3e-63 247.7 202 62.9
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.7e-63 247.3 198 66.2
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 5.1e-63 245.7 170 74.7
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 6.6e-63 245.4 165 77.0
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.5e-62 243.4 156 77.6
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 5.6e-62 242.3 149 83.2
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 2.8e-61 240.0 167 70.1
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.1e-60 238.0 167 74.3
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.3e-58 231.1 171 70.2
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.7e-58 230.7 149 80.5
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.2e-58 230.3 152 78.9
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.4e-57 227.6 167 68.9
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.9e-57 227.3 156 76.3
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.2e-57 226.5 193 65.3
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 4.2e-57 226.1 172 68.0
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 4.2e-57 226.1 160 75.6
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 2.4e-52 210.3 173 62.4
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 2.0e-51 207.2 167 63.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.1e-49 201.4 131 74.8
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.1e-49 201.4 150 69.3
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.3e-46 188.7 119 82.4
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 7.1e-33 145.6 73 90.4
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 3.9e-31 139.8 93 81.7
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.1e-30 138.3 108 66.7
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 1.1e-30 138.3 108 66.7
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 1.8e-28 131.0 69 85.5
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 4.5e-27 126.3 123 58.5
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.5e-27 126.3 65 89.2
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 2.2e-26 124.0 160 43.8
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.6e-24 117.9 79 83.5
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.6e-24 117.9 93 66.7
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 3.3e-22 110.2 171 36.8
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.6e-21 107.8 71 67.6
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.4e-19 100.1 78 74.4
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.2e-18 97.4 78 71.8
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 8.5e-18 95.5 69 78.3
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.9e-17 94.4 75 62.7
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 7.2e-17 92.4 51 98.0
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 7.9e-16 89.0 64 78.1
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.8e-13 80.5 64 65.6
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 3.4e-11 73.6 50 88.0
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 5.9e-11 72.8 40 95.0
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 5.5e-09 66.2 35 88.6
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 3.6e-08 63.5 39 84.6
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.6e-08 63.5 58 56.9


User provided reference genes

Program Settings