Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.3e-290 1001.5 505 100.0
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.3e-290 1001.5 505 100.0
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.7e-283 978.0 506 97.8
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 8.7e-189 664.1 490 70.2
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 5.6e-188 661.4 501 68.9
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 6.2e-187 657.9 500 68.2
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 8.1e-187 657.5 490 68.0
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 2.5e-183 646.0 489 69.1
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.7e-182 642.5 487 67.6
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.2e-177 627.1 489 65.4
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 5.9e-177 624.8 490 65.9
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.5e-169 600.1 498 64.1
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.4e-154 550.4 481 59.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.4e-154 549.7 503 58.1
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 9.1e-154 547.7 494 55.9
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 5.5e-151 538.5 496 55.4
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 9.4e-151 537.7 499 55.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.0e-149 534.3 491 56.4
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-149 533.5 496 54.6
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.1e-148 530.8 470 60.6
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-148 529.6 493 54.2
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 4.4e-148 528.9 490 56.9
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.7e-148 528.5 496 54.8
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.7e-148 528.5 496 54.2
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 7.5e-148 528.1 490 56.3
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 9.7e-148 527.7 492 54.7
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.7e-147 526.9 496 54.0
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-147 526.9 493 54.0
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 4.8e-147 525.4 489 54.8
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.3e-147 525.0 496 54.6
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 2.4e-146 523.1 497 55.7
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 5.3e-146 521.9 485 54.4
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 5.3e-146 521.9 489 56.6
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 9.1e-146 521.2 496 54.2
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 5.9e-145 518.5 489 57.1
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.0e-144 517.7 484 54.1
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 8.5e-144 514.6 498 53.8
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.5e-143 513.8 491 52.5
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.5e-143 513.1 481 54.1
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.2e-143 512.7 484 52.7
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 5.5e-143 511.9 489 54.4
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 2.7e-142 509.6 490 52.9
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.6e-142 509.2 490 53.1
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.6e-142 509.2 490 53.3
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 3.6e-142 509.2 498 53.2
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.1e-142 508.4 481 53.6
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 6.1e-142 508.4 488 53.9
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 5.2e-141 505.4 487 55.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-140 504.2 481 53.2
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.5e-140 503.8 486 52.7
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.6e-140 503.1 484 54.1
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.4e-140 502.3 497 51.5
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 8.3e-139 498.0 481 53.0
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.6e-137 493.8 509 52.3
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 5.9e-137 491.9 480 53.3
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.0e-136 491.1 490 51.4
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.5e-135 486.5 481 52.4
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.2e-135 486.1 489 52.6
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 5.5e-135 485.3 484 51.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 3.6e-134 482.6 497 51.9
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 4.7e-134 482.3 373 64.1
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 4.7e-134 482.3 505 50.7
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.1e-134 481.9 505 51.1
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 8.0e-134 481.5 408 61.5
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.0e-133 479.6 490 52.2
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 6.8e-133 478.4 477 51.8
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 8.8e-133 478.0 505 50.1
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.4e-132 475.7 494 50.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.7e-132 475.3 482 50.2
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 9.8e-132 474.6 497 51.3
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 9.8e-132 474.6 488 52.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.7e-131 473.8 494 50.6
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.7e-131 473.8 493 51.1
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.2e-131 473.4 496 49.8
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.8e-131 473.0 491 52.3
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 4.9e-131 472.2 495 49.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 4.9e-131 472.2 480 51.9
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 6.3e-131 471.9 373 61.7
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 1.8e-130 470.3 494 49.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 3.1e-130 469.5 496 49.8
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.3e-128 463.4 493 49.7
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 2.3e-128 463.4 494 49.8
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 4.3e-127 459.1 494 50.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 9.5e-127 458.0 495 49.5
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 3.6e-126 456.1 526 47.0
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.0e-125 454.5 492 48.8
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.0e-125 454.5 492 48.8
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 2.3e-125 453.4 499 49.3
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 2.3e-125 453.4 488 49.0
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.0e-125 453.0 487 49.3
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 8.9e-125 451.4 492 48.8
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.4e-124 449.1 486 48.6
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 3.7e-123 446.0 375 57.3
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.1e-122 444.5 493 48.7
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 1.1e-122 444.5 492 48.4
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 5.0e-120 435.6 488 47.3
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.1e-119 434.5 482 47.7
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.3e-119 433.0 487 47.2
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.3e-119 432.6 491 46.6
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 5.2e-117 425.6 488 46.9
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.4e-116 422.5 499 45.3
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.4e-115 418.7 486 45.7
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.1e-114 417.9 487 47.2
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 7.0e-114 415.2 491 46.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 4.6e-113 412.5 291 69.8
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.9e-111 407.1 291 69.8
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 4.3e-111 406.0 494 44.7
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 7.3e-111 405.2 482 47.5
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 2.8e-110 403.3 292 68.8
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 7.5e-108 395.2 438 48.2
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.4e-106 391.0 490 42.4
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 7.8e-105 385.2 269 71.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 8.6e-104 381.7 481 44.3
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 2.2e-99 367.1 329 57.4
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 8.4e-99 365.2 526 38.4
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 7.3e-95 352.1 294 63.9
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.8e-93 347.4 471 42.7
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.0e-93 346.3 415 45.8
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.4e-92 342.8 411 46.2
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.9e-88 329.7 471 40.8
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.4e-85 321.2 377 45.9
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.8e-85 320.9 492 37.0
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.4e-77 294.7 241 64.3
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-77 294.3 472 38.3
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 9.0e-77 292.0 294 51.7
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-74 284.6 496 36.5
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.5e-71 273.9 417 37.9
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 4.0e-69 266.5 365 44.1
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.7e-65 253.8 439 34.9
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.6e-65 253.1 355 38.9
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.9e-65 252.3 387 38.8
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-63 248.1 165 69.7
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 3.7e-62 243.4 186 66.7
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 8.2e-62 242.3 471 33.1
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 3.4e-60 236.9 539 30.2
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 7.2e-58 229.2 207 58.5
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.6e-57 228.0 597 30.2
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 6.1e-57 226.1 188 56.9
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.0e-56 225.3 256 47.7
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 5.1e-56 223.0 146 80.1
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.9e-55 221.1 471 33.3
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.9e-55 221.1 456 35.1
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 4.3e-55 219.9 311 41.5
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 7.4e-55 219.2 503 31.2
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.6e-52 210.7 494 30.8
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-51 207.2 366 38.0
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 2.7e-49 200.7 644 26.7
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.6e-49 200.3 372 31.2
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.0e-48 197.2 173 56.1
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 3.9e-48 196.8 128 80.5
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 7.4e-47 192.6 259 42.9
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.4e-47 192.6 492 27.8
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 1.3e-43 181.8 255 43.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.1e-42 178.7 280 37.9
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 7.2e-42 176.0 423 31.0
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.4e-40 171.8 124 66.1
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 6.3e-38 162.9 165 55.2
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.0e-35 155.6 263 35.7
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.5e-31 139.4 98 68.4
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.4e-29 134.4 120 58.3
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 5.9e-28 129.8 307 33.6
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.2e-27 127.9 146 44.5
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.5e-26 125.2 93 63.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 3.0e-24 117.5 475 26.1
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 7.5e-23 112.8 131 44.3
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 2.2e-22 111.3 129 44.2
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 5.5e-18 96.7 103 44.7
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 2.1e-17 94.7 91 50.5
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.2e-12 79.0 169 27.2
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.5e-07 62.0 72 41.7
Cfa025427 Carpinus fangiana HOM05D000553 ORTHO05D125085 2.2e-06 58.2 73 31.5


User provided reference genes

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