Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.7e-109 398.7 197 100.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 5.4e-102 374.4 204 92.2
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-101 372.9 204 91.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.8e-96 354.4 204 85.8
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 4.9e-95 351.3 204 84.8
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 5.4e-94 347.8 204 84.8
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.2e-93 346.7 204 84.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 2.0e-93 345.9 204 83.8
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 4.6e-93 344.7 204 84.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 7.8e-93 344.0 204 83.3
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.3e-92 343.2 204 82.4
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.3e-92 343.2 204 83.8
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.3e-92 343.2 204 82.8
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 2.3e-92 342.4 204 82.4
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.9e-92 341.7 204 82.8
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 3.9e-92 341.7 204 82.8
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 6.6e-92 340.9 204 82.4
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-91 339.7 204 82.4
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.5e-91 339.0 204 80.9
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.3e-91 338.2 204 80.4
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-90 336.7 204 81.4
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.6e-90 336.3 204 82.8
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.1e-90 335.9 204 80.9
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.1e-90 335.9 204 80.9
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.6e-90 335.1 204 80.4
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.6e-90 335.1 204 80.9
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 4.7e-90 334.7 204 80.9
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 8.0e-90 334.0 204 80.9
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.4e-89 333.2 204 80.9
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.4e-89 333.2 204 80.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.8e-89 332.8 204 80.9
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.8e-89 332.8 204 80.4
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.8e-89 332.8 204 80.4
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 4.0e-89 331.6 204 79.9
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.2e-89 331.3 204 80.4
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 5.2e-89 331.3 204 79.4
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.2e-89 331.3 204 79.9
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 5.2e-89 331.3 204 79.9
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 5.2e-89 331.3 204 80.9
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 6.8e-89 330.9 204 79.9
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 6.8e-89 330.9 204 79.9
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 6.8e-89 330.9 204 81.9
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.9e-89 330.5 204 79.4
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.9e-89 330.5 204 79.4
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 8.9e-89 330.5 204 80.4
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.2e-88 330.1 204 78.4
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.5e-88 329.7 204 80.4
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-88 329.3 204 79.4
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.6e-88 328.9 204 78.9
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.4e-88 328.6 204 79.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.4e-88 328.2 204 79.9
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 4.4e-88 328.2 204 78.9
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 5.8e-88 327.8 204 78.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.8e-88 327.8 204 78.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 7.5e-88 327.4 204 78.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 7.5e-88 327.4 204 78.4
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 7.5e-88 327.4 204 79.4
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 7.5e-88 327.4 204 79.9
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.8e-88 327.0 204 79.9
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-87 326.6 196 86.2
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.3e-87 326.6 204 79.9
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.3e-87 326.6 204 79.9
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.7e-87 326.2 204 78.4
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.2e-87 325.9 204 78.4
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 3.7e-87 325.1 204 78.9
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.9e-87 324.7 204 77.9
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 6.4e-87 324.3 204 78.9
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 8.3e-87 323.9 204 78.4
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-86 323.2 204 78.4
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 4.1e-86 321.6 204 77.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 4.1e-86 321.6 204 77.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 7.0e-86 320.9 205 78.0
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 7.0e-86 320.9 204 77.0
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.2e-85 320.1 204 77.9
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.2e-85 320.1 221 74.2
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 2.1e-85 319.3 204 77.5
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 2.1e-85 319.3 204 76.5
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.1e-85 319.3 204 77.5
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 6.0e-85 317.8 204 76.5
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 6.0e-85 317.8 204 76.5
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 6.0e-85 317.8 204 78.4
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 6.0e-85 317.8 204 76.0
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 7.8e-85 317.4 204 77.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.0e-84 317.0 204 77.0
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.0e-84 317.0 204 76.5
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.7e-84 316.2 204 76.0
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 2.3e-84 315.8 204 75.5
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 2.3e-84 315.8 204 75.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.0e-84 315.5 204 76.5
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.5e-83 313.2 204 76.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.9e-83 312.8 204 77.5
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 4.3e-83 311.6 204 77.0
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 5.6e-83 311.2 204 77.0
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 9.5e-83 310.5 204 74.5
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.6e-82 309.7 204 75.0
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 4.7e-82 308.1 204 74.0
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 4.7e-82 308.1 204 74.0
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.7e-82 308.1 204 74.0
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.7e-82 308.1 204 77.0
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.1e-81 307.0 204 76.5
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.1e-81 307.0 204 75.5
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.1e-81 307.0 204 72.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.4e-81 306.6 204 74.5
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.5e-80 303.1 224 70.1
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.5e-80 303.1 204 73.0
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 9.9e-80 300.4 204 75.0
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 9.2e-78 293.9 204 70.6
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.6e-77 293.1 227 68.3
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 2.1e-77 292.7 161 87.6
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.0e-76 290.4 217 67.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.3e-76 289.3 204 75.0
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 5.6e-75 284.6 161 85.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 5.6e-75 284.6 161 84.5
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 8.1e-74 280.8 218 66.1
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.2e-72 276.9 172 81.4
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.1e-70 270.4 192 67.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.1e-70 270.4 205 65.4
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.2e-70 268.9 155 82.6
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.1e-70 267.7 196 71.4
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 2.3e-68 262.7 162 80.9
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 5.1e-68 261.5 192 66.7
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.8e-66 255.8 204 65.2
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.0e-64 249.6 185 69.2
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.0e-64 249.6 185 69.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.2e-61 240.4 193 62.2
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-58 228.8 148 83.1
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.8e-58 228.4 150 76.0
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.3e-55 220.3 196 57.7
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.6e-51 204.1 134 76.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.6e-50 203.4 192 55.7
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 7.1e-46 188.0 214 52.8
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.8e-44 183.3 191 49.7
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.7e-44 181.0 98 87.8
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.5e-43 180.3 131 72.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.5e-43 180.3 103 83.5
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.3e-42 177.2 121 73.6
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.2e-42 174.5 121 71.9
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-41 173.7 121 71.9
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.8e-41 173.3 121 71.9
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.9e-41 171.4 121 71.1
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 6.9e-41 171.4 103 79.6
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.0e-41 171.0 118 72.9
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-40 169.5 118 72.0
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.6e-40 169.5 116 73.3
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.5e-40 168.7 118 71.2
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.6e-40 167.9 93 87.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-38 164.1 118 69.5
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 5.3e-33 145.2 163 45.4
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 6.9e-33 144.8 112 66.1
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 7.7e-32 141.4 112 64.3
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-25 120.6 84 71.4
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.2e-24 117.5 143 48.3
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.2e-22 109.0 158 43.0
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.7e-21 105.5 63 81.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.4e-20 104.0 66 71.2
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-19 100.1 63 77.8
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.4e-19 98.2 74 71.6
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.3e-18 95.1 123 50.4
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.9e-15 86.3 50 76.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 2.9e-15 86.3 50 76.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-15 84.7 50 74.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 8.5e-15 84.7 50 74.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 8.5e-15 84.7 47 76.6
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 8.0e-13 78.2 69 56.5
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 8.0e-13 78.2 69 56.5
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.6e-11 73.2 69 50.7
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 4.4e-11 72.4 62 59.7
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.1e-09 67.8 61 55.7
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.9e-07 59.7 32 78.1
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 3.8e-07 59.3 89 39.3


User provided reference genes

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