Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.6e-203 711.8 359 100.0
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.4e-196 689.5 358 97.8
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.4e-169 599.7 359 83.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 7.9e-168 594.0 359 82.7
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 5.1e-167 591.3 359 83.3
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 6.2e-165 584.3 361 82.3
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 8.1e-165 583.9 359 81.6
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 4.0e-164 581.6 364 81.6
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.2e-163 580.1 364 79.9
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 2.2e-162 575.9 364 79.9
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 1.9e-161 572.8 364 79.4
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 2.7e-160 568.9 347 81.6
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 3.9e-143 511.9 365 72.6
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.9e-143 511.9 362 73.2
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.5e-142 510.0 364 73.6
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 2.2e-141 506.1 368 72.0
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 1.8e-140 503.1 358 72.6
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.5e-139 500.0 364 71.4
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 2.6e-139 499.2 364 71.2
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 2.6e-139 499.2 362 71.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 3.8e-138 495.4 366 72.7
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 5.0e-138 495.0 365 70.4
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.5e-138 494.2 363 71.9
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 8.5e-138 494.2 359 70.8
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.1e-137 493.8 365 72.9
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.4e-137 493.4 364 71.2
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.5e-137 491.5 363 71.6
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 9.4e-137 490.7 366 71.9
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.2e-136 490.3 363 71.6
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.2e-136 490.3 364 71.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 2.0e-134 483.0 363 68.3
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 3.3e-134 482.3 363 69.1
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.3e-133 480.3 359 71.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.7e-133 479.9 385 65.7
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.4e-132 476.9 366 67.8
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.4e-132 476.9 364 65.4
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.8e-132 476.5 356 69.7
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 2.4e-132 476.1 367 68.1
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 4.1e-132 475.3 370 69.5
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 4.1e-132 475.3 363 68.0
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.0e-131 473.0 366 67.5
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.0e-131 473.0 363 68.3
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.4e-129 466.8 359 69.1
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.4e-129 466.8 328 74.1
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.9e-129 466.5 365 66.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 4.2e-129 465.3 355 69.6
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 7.2e-129 464.5 362 68.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 9.4e-129 464.2 366 65.6
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.6e-128 462.2 428 60.3
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.4e-127 460.3 354 69.2
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.3e-127 459.5 361 66.8
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 3.3e-126 455.7 355 62.3
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.4e-126 455.3 357 67.2
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.4e-126 455.3 359 66.6
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 5.7e-126 454.9 357 67.2
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 7.4e-126 454.5 355 63.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 9.7e-126 454.1 346 65.6
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.3e-125 453.8 359 67.4
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 2.2e-125 453.0 359 66.6
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.8e-125 452.6 362 66.3
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.8e-125 451.8 374 63.6
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 6.3e-125 451.4 337 70.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 2.4e-124 449.5 328 72.0
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.4e-124 449.5 355 66.2
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 7.0e-124 448.0 357 66.1
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.5e-123 445.7 431 58.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.5e-123 445.7 363 64.5
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 3.5e-123 445.7 328 71.0
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 5.9e-123 444.9 352 67.9
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 5.9e-123 444.9 370 64.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.0e-122 444.1 329 71.1
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.3e-122 443.7 328 70.1
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.7e-122 443.4 352 66.2
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.2e-122 443.0 328 70.1
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.1e-121 440.7 359 64.9
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.9e-121 439.9 346 68.2
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 1.9e-121 439.9 325 72.3
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 3.2e-121 439.1 350 65.7
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.2e-121 439.1 326 66.0
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.2e-121 439.1 358 64.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.2e-121 439.1 353 60.3
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 4.2e-121 438.7 325 69.8
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 4.2e-121 438.7 359 62.7
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 7.2e-121 438.0 375 64.3
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.2e-120 437.2 360 64.4
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.7e-120 436.0 361 62.9
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 8.0e-120 434.5 359 60.2
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 4.0e-119 432.2 352 65.1
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 2.6e-118 429.5 357 64.4
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 2.4e-116 422.9 357 63.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 3.8e-114 415.6 326 68.1
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 2.5e-113 412.9 359 62.1
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 3.2e-113 412.5 337 64.7
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 3.2e-113 412.5 354 61.0
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 8.0e-112 407.9 362 61.0
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-111 404.8 358 60.9
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 6.8e-111 404.8 357 60.2
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 6.8e-111 404.8 354 60.2
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 6.8e-111 404.8 358 59.2
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.6e-110 402.9 326 66.0
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.4e-110 402.5 331 65.9
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.7e-109 400.2 324 65.7
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.8e-109 398.7 366 60.4
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 1.4e-108 397.1 324 65.7
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.4e-108 397.1 355 60.3
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.8e-108 396.7 325 65.5
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 4.1e-108 395.6 355 60.6
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 5.4e-108 395.2 324 65.4
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.9e-107 391.7 343 60.6
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 3.8e-106 389.0 323 63.5
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.6e-106 388.3 224 78.1
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 8.6e-106 387.9 346 60.7
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.1e-105 387.5 343 60.9
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 2.3e-103 379.8 298 69.1
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 3.0e-103 379.4 366 57.9
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 4.1e-100 369.0 413 48.7
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 2.0e-99 366.7 347 50.1
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 4.5e-99 365.5 299 66.2
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.7e-98 363.6 352 61.1
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.1e-97 360.9 272 65.1
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.9e-97 360.1 224 73.2
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.3e-97 359.4 294 67.7
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 6.1e-96 355.1 273 64.8
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.9e-93 346.3 346 55.5
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.4e-92 344.0 357 54.6
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.7e-91 339.7 239 65.7
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.0e-90 336.3 284 59.9
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.9e-90 335.9 298 63.1
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 5.0e-90 335.5 326 51.8
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 6.6e-90 335.1 357 53.2
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.6e-90 334.7 292 64.0
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-89 334.0 332 53.6
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.5e-89 333.2 190 76.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 1.6e-88 330.5 331 49.8
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 1.4e-87 327.4 336 53.6
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 9.8e-86 321.2 361 54.0
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 3.5e-83 312.8 329 54.1
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 4.6e-83 312.4 326 53.7
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 6.6e-82 308.5 326 54.3
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 1.9e-81 307.0 337 53.1
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 7.3e-81 305.1 326 49.1
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.8e-79 300.4 330 53.0
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.8e-79 300.4 327 53.2
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 4.9e-77 292.4 327 53.2
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 8.3e-77 291.6 358 46.1
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 8.3e-77 291.6 331 51.4
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.2e-76 289.7 330 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.2e-75 287.7 320 50.6
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 2.7e-75 286.6 239 57.3
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 3.5e-75 286.2 331 53.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 4.6e-75 285.8 326 51.5
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 9.5e-73 278.1 328 52.1
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 4.7e-72 275.8 335 49.3
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.2e-72 275.4 329 49.5
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 9.6e-65 251.5 224 50.4
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.8e-64 250.0 177 66.1
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 9.3e-60 235.0 353 43.9
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.7e-59 233.4 362 42.0
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 9.3e-52 208.4 374 36.6
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 2.1e-51 207.2 317 42.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.8e-50 204.1 154 63.0
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.8e-50 204.1 109 83.5
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 4.8e-48 196.1 110 80.9
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.4e-46 189.9 93 91.4
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.7e-16 91.3 102 40.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.5e-14 84.7 48 75.0
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-13 81.3 38 89.5
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 7.2e-12 75.9 66 66.7
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.4e-10 71.6 43 76.7
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 3.9e-10 70.1 40 80.0
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 3.9e-10 70.1 40 80.0
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 5.2e-10 69.7 82 48.8
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 8.8e-10 68.9 44 72.7
arahy.Tifrunner.gnm1.ann1.RPY2B8 Arachis hypogaea HOM05D004014 ORTHO05D031593 6.3e-08 62.8 42 71.4
C08p21400 Brassica napus HOM05D003920 ORTHO05D017698 3.1e-07 60.5 50 62.0
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 3.1e-07 60.5 45 64.4
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 3.5e-06 57.0 30 83.3


User provided reference genes

Program Settings