Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z4W0L1 Arachis hypogaea HOM05D000992 ORTHO05D001928 6.5e-31 136.7 68 100.0
arahy.Tifrunner.gnm1.ann1.IPCF80 Arachis hypogaea HOM05D000992 ORTHO05D001928 6.3e-18 93.6 50 90.0
arahy.Tifrunner.gnm1.ann1.M78ZSX Arachis hypogaea HOM05D000992 ORTHO05D001928 6.3e-18 93.6 50 90.0
arahy.Tifrunner.gnm1.ann1.5WQ1I2 Arachis hypogaea HOM05D000992 ORTHO05D001928 5.3e-17 90.5 44 100.0
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 5.3e-17 90.5 45 95.6
arahy.Tifrunner.gnm1.ann1.F8MW8X Arachis hypogaea HOM05D000992 ORTHO05D001928 1.2e-16 89.4 44 97.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.5e-16 87.8 45 93.3
Ca_10464_v3 Cicer arietinum L. HOM05D000992 ORTHO05D001928 1.6e-13 79.0 48 79.2
TPR.G37753 Trifolium pratense HOM05D000992 ORTHO05D001928 3.6e-13 77.8 48 77.1
Glyma.10G200200 Glycine max HOM05D000992 ORTHO05D001928 4.7e-13 77.4 50 74.0
Phvul.007G144900 Phaseolus vulgaris HOM05D000992 ORTHO05D001928 6.1e-13 77.0 48 77.1
Psat6g174200 Pisum sativum HOM05D000992 ORTHO05D001928 6.1e-13 77.0 48 77.1
Glyma.20G190300 Glycine max HOM05D000992 ORTHO05D001928 8.0e-13 76.6 48 77.1
Medtr1g090873 Medicago truncatula HOM05D000992 ORTHO05D001928 1.0e-12 76.3 50 74.0
Cpa.g.sc128.69 Carica papaya HOM05D000992 ORTHO05D001928 4.0e-12 74.3 48 70.8
VMungo0720G1652 Vigna mungo HOM05D000992 ORTHO05D001928 1.2e-11 72.8 47 76.6
Lj5g0011693 Lotus japonicus HOM05D000992 ORTHO05D001928 1.5e-11 72.4 47 72.3
Lalb_Chr02g0151201 Lupinus albus HOM05D000992 ORTHO05D001928 2.6e-11 71.6 48 68.8
COL.COLO4_08797 Corchorus olitorius HOM05D000992 ORTHO05D001928 3.4e-11 71.2 45 71.1
Cfa011196 Carpinus fangiana HOM05D000992 ORTHO05D001928 5.7e-11 70.5 48 68.8
Sabra08G0019500 Salix brachista HOM05D000992 ORTHO05D006704 5.7e-11 70.5 47 68.1
Potri.010G232400 Populus trichocarpa HOM05D000992 ORTHO05D001928 7.5e-11 70.1 47 70.2
Sabra10G0180200 Salix brachista HOM05D000992 ORTHO05D001928 7.5e-11 70.1 47 70.2
Prupe.2G096500 Prunus persica HOM05D000992 ORTHO05D001928 9.8e-11 69.7 48 68.8
TPR.G33941 Trifolium pratense HOM05D000992 ORTHO05D001928 9.8e-11 69.7 48 70.8
MD02G1241000 Malus domestica HOM05D000992 ORTHO05D001928 1.7e-10 68.9 48 68.8
Hma1.2p1_1275F.1_g271990 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 2.2e-10 68.6 43 69.8
Lalb_Chr06g0170071 Lupinus albus HOM05D000992 ORTHO05D001928 2.8e-10 68.2 48 66.7
Atru.chr12.925 Acer truncatum HOM05D000992 ORTHO05D001928 3.7e-10 67.8 49 61.2
MD07G1075600 Malus domestica HOM05D000992 ORTHO05D001928 3.7e-10 67.8 48 66.7
Duzib128G0113 Durio zibethinus HOM05D000992 ORTHO05D001928 4.8e-10 67.4 48 62.5
Haze_02650 Corylus avellana HOM05D000992 ORTHO05D001928 6.3e-10 67.0 48 66.7
Lj3A934G28 Lonicera japonica HOM05D000992 ORTHO05D001928 6.3e-10 67.0 47 63.8
RcHm_v2.0_Chr1g0336731 Rosa chinensis HOM05D000992 ORTHO05D001928 6.3e-10 67.0 48 66.7
CiPaw.13G034500 Carya illinoinensis HOM05D000992 ORTHO05D001928 1.1e-09 66.2 47 63.8
Duzib174G0004 Durio zibethinus HOM05D000992 ORTHO05D001928 1.1e-09 66.2 44 65.9
Potri.008G029200 Populus trichocarpa HOM05D000992 ORTHO05D001928 1.4e-09 65.9 47 66.0
Dinv31274 Davidia involucrata HOM05D000992 ORTHO05D001928 1.8e-09 65.5 47 66.0
FAN10G2691 Fragaria x ananassa HOM05D000992 ORTHO05D001928 1.8e-09 65.5 48 62.5
Hma1.2p1_0670F.1_g200425 Hydrangea macrophylla HOM05D000992 ORTHO05D001928 2.4e-09 65.1 43 65.1
FvH4_7g06890 Fragaria vesca HOM05D000992 ORTHO05D001928 3.1e-09 64.7 48 60.4
PGR142G0912 Punica granatum HOM05D000992 ORTHO05D001928 3.1e-09 64.7 47 59.6
ClCG08G007980 Citrullus lanatus HOM05D000992 ORTHO05D001928 4.1e-09 64.3 47 63.8
FAN03G3495 Fragaria x ananassa HOM05D000992 ORTHO05D001928 4.1e-09 64.3 48 60.4
HanXRQChr14g0456231 Helianthus annuus HOM05D000992 ORTHO05D001928 5.4e-09 63.9 47 57.4
Manes.10G053800 Manihot esculenta HOM05D000992 ORTHO05D001928 5.4e-09 63.9 49 55.1
Sed0004636 Sechium edule HOM05D000992 ORTHO05D001928 5.4e-09 63.9 47 61.7
Actinidia18560 Actinidia chinensis HOM05D000992 ORTHO05D001928 7.0e-09 63.5 50 60.0
Eucgr.G02726 Eucalyptus grandis HOM05D000992 ORTHO05D001928 7.0e-09 63.5 47 61.7
Thecc.10G092300 Theobroma cacao HOM05D000992 ORTHO05D001928 9.1e-09 63.2 48 60.4
TAR633G1854 Trochodendron aralioides HOM05D000992 ORTHO05D001928 9.1e-09 63.2 49 57.1
Actinidia06712 Actinidia chinensis HOM05D000992 ORTHO05D001928 1.2e-08 62.8 50 60.0
Lsat_1_v5_gn_2_103021 Lactuca sativa HOM05D000992 ORTHO05D001928 1.2e-08 62.8 47 59.6
unitig_748.g8778 Utricularia gibba HOM05D000992 ORTHO05D001928 1.2e-08 62.8 47 66.0
TWI63G1207 Tripterygium wilfordii HOM05D000992 ORTHO05D001928 1.6e-08 62.4 49 57.1
FAN06G0927 Fragaria x ananassa HOM05D000992 ORTHO05D001928 2.0e-08 62.0 48 58.3
Ciclev10031766m.g Citrus clementina HOM05D000992 ORTHO05D001928 2.7e-08 61.6 48 56.2
CsaV3_2G032800 Cucumis sativus L. HOM05D000992 ORTHO05D001928 3.5e-08 61.2 47 61.7
Gohir.A01G129000 Gossypium hirsutum HOM05D000992 ORTHO05D001928 3.5e-08 61.2 48 58.3
Gohir.D01G118600 Gossypium hirsutum HOM05D000992 ORTHO05D001928 3.5e-08 61.2 48 58.3
Gorai.002G144700 Gossypium raimondii HOM05D000992 ORTHO05D001928 3.5e-08 61.2 48 58.3
Peaxi162Scf00321g00008 Petunia axillaris HOM05D000992 ORTHO05D001928 4.5e-08 60.8 43 62.8
QL04p040209 Quercus lobata HOM05D000992 ORTHO05D001928 4.5e-08 60.8 46 58.7
vmacro07209 Vaccinium macrocarpon HOM05D000992 ORTHO05D001928 4.5e-08 60.8 47 59.6
ECA238G4096 Erigeron canadensis HOM05D000992 ORTHO05D001928 5.9e-08 60.5 49 51.0
MBI01_g19098_MAGBIO Magnolia biondii HOM05D000992 ORTHO05D001928 7.7e-08 60.1 46 54.3
Migut.F01890 Erythranthe guttata HOM05D000992 ORTHO05D001928 1.3e-07 59.3 49 57.1
SalBow4G0596 Salvia bowleyana HOM05D000992 ORTHO05D001928 1.7e-07 58.9 47 59.6
Hund17787 Selenicereus undatus HOM05D000992 ORTHO05D001928 1.7e-07 58.9 49 55.1
MELO3C019856.2 Cucumis melo HOM05D000992 ORTHO05D001928 2.3e-07 58.5 46 60.9
GSVIVG01034664001 Vitis vinifera HOM05D000992 ORTHO05D001928 2.3e-07 58.5 47 57.4
AT3G52190 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 3.8e-07 57.8 47 59.6
CANSAT56G3856 Cannabis sativa HOM05D000992 ORTHO05D001928 3.8e-07 57.8 48 58.3
DCAR_006381 Daucus carota HOM05D000992 ORTHO05D001928 3.8e-07 57.8 47 61.7
PGSC0003DMG402027324 Solanum tuberosum HOM05D000992 ORTHO05D001928 3.8e-07 57.8 43 62.8
MSTRG.9121 Avicennia marina HOM05D000992 ORTHO05D001928 5.0e-07 57.4 47 61.7
Nn6g35156 Nelumbo nucifera HOM05D000992 ORTHO05D001928 5.0e-07 57.4 45 53.3
Nitab4.5_0012197g0010 Nicotiana tabacum HOM05D000992 ORTHO05D001928 8.6e-07 56.6 43 60.5
A09p45250 Brassica napus HOM05D000992 ORTHO05D006704 1.1e-06 56.2 47 57.4
BolC8t50361H Brassica oleracea HOM05D000992 ORTHO05D001928 1.1e-06 56.2 47 57.4
BraA09t39988Z Brassica rapa HOM05D000992 ORTHO05D001928 1.1e-06 56.2 47 57.4
Nitab4.5_0000593g0260 Nicotiana tabacum HOM05D000992 ORTHO05D001928 1.1e-06 56.2 43 60.5
Aqoxy1G01026 Aquilegia oxysepala HOM05D000992 ORTHO05D001928 1.5e-06 55.8 49 55.1
BcaC07g39588 Brassica carinata HOM05D000992 ORTHO05D001928 1.5e-06 55.8 47 57.4
C08p27430 Brassica napus HOM05D000992 ORTHO05D006704 1.5e-06 55.8 47 57.4
ATR0665G575 Amborella trichopoda HOM05D000992 ORTHO05D001928 1.9e-06 55.5 46 52.2
Cc02_g10430 Coffea canephora HOM05D000992 ORTHO05D001928 1.9e-06 55.5 43 58.1
Solyc11g007780.2 Solanum lycopersicum HOM05D000992 ORTHO05D001928 1.9e-06 55.5 43 60.5
Sopen11g003640 Solanum pennellii HOM05D000992 ORTHO05D001928 1.9e-06 55.5 43 60.5
PGSC0003DMG400019005 Solanum tuberosum HOM05D000992 ORTHO05D001928 1.9e-06 55.5 43 60.5
AL5G32770 Arabidopsis lyrata HOM05D000992 ORTHO05D001928 3.3e-06 54.7 47 55.3
Carub.0005s1855 Capsella rubella HOM05D000992 ORTHO05D001928 3.3e-06 54.7 47 55.3
Thhalv10010438m.g Eutrema salsugineum HOM05D000992 ORTHO05D001928 3.3e-06 54.7 47 55.3
PSO063G5536 Papaver somniferum HOM05D000992 ORTHO05D001928 3.3e-06 54.7 49 49.0
Sp5g10080 Schrenkiella parvula HOM05D000992 ORTHO05D001928 3.3e-06 54.7 49 51.0
Aa31LG10G7290 Aethionema arabicum HOM05D000992 ORTHO05D001928 5.5e-06 53.9 49 53.1
Ah.14g086360 Amaranthus hybridus HOM05D000992 ORTHO05D001928 7.2e-06 53.5 46 50.0
CARHR161950 Cardamine hirsuta HOM05D000992 ORTHO05D001928 7.2e-06 53.5 47 53.2
PSO339G4494 Papaver somniferum HOM05D000992 ORTHO05D001928 9.5e-06 53.1 49 46.9
Rhsim03G0110600 Rhododendron simsii HOM05D000992 ORTHO05D001928 9.5e-06 53.1 47 53.2
PGSC0003DMG404027324 Solanum tuberosum HOM05D000992 ORTHO05D001928 9.5e-06 53.1 43 55.8
SGA_v2.0_scaffold62G21359 Striga asiatica HOM05D000992 ORTHO05D001928 9.5e-06 53.1 47 57.4


User provided reference genes

Program Settings