Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.9e-57 223.8 116 100.0
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.3e-55 219.5 116 97.4
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 8.4e-55 216.9 116 96.6
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.5e-54 215.3 116 94.8
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 9.3e-54 213.4 113 95.6
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.2e-53 213.0 116 93.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.6e-53 212.6 116 91.4
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.3e-52 209.5 116 93.1
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 1.8e-52 209.1 110 96.4
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.8e-52 209.1 116 94.8
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 2.3e-52 208.8 116 93.1
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 2.3e-52 208.8 116 93.1
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 3.0e-52 208.4 116 92.2
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 3.0e-52 208.4 116 92.2
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.9e-52 208.0 116 92.2
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 3.9e-52 208.0 116 92.2
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 3.9e-52 208.0 116 92.2
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.9e-52 208.0 116 92.2
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.9e-52 208.0 116 92.2
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 5.1e-52 207.6 116 92.2
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 6.7e-52 207.2 116 91.4
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 6.7e-52 207.2 116 91.4
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 6.7e-52 207.2 116 90.5
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 8.7e-52 206.8 116 92.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.5e-51 206.1 116 91.4
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.5e-51 205.3 116 91.4
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 3.3e-51 204.9 116 90.5
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 90.5
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 4.3e-51 204.5 116 92.2
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 5.7e-51 204.1 113 92.0
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 7.4e-51 203.8 116 89.7
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 9.7e-51 203.4 116 90.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.3e-50 203.0 116 90.5
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.6e-50 202.6 116 89.7
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.6e-50 202.6 116 89.7
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.2e-50 202.2 113 91.2
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 2.2e-50 202.2 110 93.6
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 2.8e-50 201.8 110 92.7
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 3.7e-50 201.4 116 89.7
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 92.0
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 92.0
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 4.8e-50 201.1 116 87.1
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 6.3e-50 200.7 116 88.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 6.3e-50 200.7 116 88.8
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 8.2e-50 200.3 113 92.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.8e-49 199.1 116 87.9
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.8e-49 199.1 113 91.2
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.8e-49 199.1 116 89.7
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-49 199.1 116 88.8
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.4e-49 198.7 116 89.7
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 115 87.8
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.4e-49 198.7 113 91.2
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 3.1e-49 198.4 116 88.8
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 89.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 92.0
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 4.1e-49 198.0 116 87.9
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 91.2
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 90.3
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 6.9e-49 197.2 116 88.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 6.9e-49 197.2 115 87.8
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 6.9e-49 197.2 115 87.8
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 6.9e-49 197.2 113 90.3
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 6.9e-49 197.2 116 87.9
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 115 88.7
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.5e-48 196.1 113 90.3
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 1.5e-48 196.1 113 88.5
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.5e-48 196.1 116 87.9
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 90.3
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 89.4
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 3.4e-48 194.9 113 88.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.4e-48 194.9 117 88.9
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 3.4e-48 194.9 113 90.3
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 87.6
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 88.5
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 4.5e-48 194.5 116 86.2
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 4.5e-48 194.5 116 86.2
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 116 87.1
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 86.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 5.9e-48 194.1 116 86.2
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 86.7
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 88.9
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 88.5
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 88.5
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 89.4
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 89.4
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 89.4
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 1.7e-47 192.6 113 88.5
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 2.2e-47 192.2 113 86.7
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.9e-47 191.8 116 83.6
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.8e-47 191.4 113 88.5
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 6.5e-47 190.7 113 87.6
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 6.5e-47 190.7 113 89.4
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 87.6
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 87.6
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 87.6
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 86.7
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 89.4
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.4e-46 189.5 113 87.6
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-46 189.5 113 87.6
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.9e-46 189.1 118 86.4
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.9e-46 189.1 118 86.4
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.9e-46 189.1 118 86.4
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.9e-46 189.1 113 88.5
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 86.7
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 84.1
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.5e-46 187.6 113 84.1
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.5e-46 187.6 116 82.8
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 7.2e-46 187.2 108 88.9
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 7.2e-46 187.2 111 87.4
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 81.0
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 7.2e-46 187.2 116 82.8
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 87.6
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 81.2
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 3.6e-45 184.9 118 85.6
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 6.1e-45 184.1 116 83.6
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 3.0e-44 181.8 116 83.6
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 3.9e-44 181.4 126 77.8
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 5.1e-44 181.0 152 67.8
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 6.7e-44 180.6 117 81.2
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 8.8e-44 180.3 113 82.3
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.5e-43 179.5 105 87.6
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.3e-43 177.9 113 76.1
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.2e-42 175.6 112 78.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 8.2e-42 173.7 109 80.7
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 4.1e-41 171.4 200 53.5
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.5e-40 169.5 89 97.8
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.5e-39 164.1 89 94.4
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 4.7e-37 157.9 89 86.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 6.1e-37 157.5 109 72.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 3.0e-36 155.2 88 90.9
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.5e-35 152.9 88 88.6
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.3e-35 151.8 117 74.4
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 8.2e-34 147.1 88 87.5
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 4.1e-33 144.8 88 84.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.5e-32 142.9 91 79.1
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.5e-32 142.9 102 75.5
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.9e-31 138.7 105 72.4
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.9e-31 138.7 105 72.4
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 2.9e-31 138.7 81 86.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.8e-31 138.3 85 83.5
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 6.5e-31 137.5 72 91.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.5e-30 136.3 73 94.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 9.4e-30 133.7 67 98.5
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 2.2e-26 122.5 106 53.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 8.2e-26 120.6 83 77.1
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 4.1e-25 118.2 73 86.3
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 7.0e-25 117.5 81 70.4
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.5e-24 114.8 73 83.6
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 3.8e-23 111.7 86 72.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 9.4e-22 107.1 71 76.1
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.7e-21 104.8 70 78.6
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-19 100.1 107 59.8
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.7e-16 87.4 61 75.4
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 4.7e-13 78.2 51 78.4
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 6.8e-12 74.3 50 78.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 3.4e-11 72.0 45 82.2
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 3.4e-11 72.0 45 82.2
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.8e-10 68.9 41 82.9
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.9e-06 56.2 57 61.4


User provided reference genes

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