Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z35ZW2 Arachis hypogaea HOM05D000153 ORTHO05D085890 1.6e-97 359.4 176 100.0
arahy.Tifrunner.gnm1.ann1.GY6ZBB Arachis hypogaea HOM05D000153 ORTHO05D000118 3.8e-22 109.0 130 56.9
arahy.Tifrunner.gnm1.ann1.2YKG1T Arachis hypogaea HOM05D000153 ORTHO05D000118 1.1e-21 107.5 130 56.2
Ca_03090_v3 Cicer arietinum L. HOM05D000153 ORTHO05D000118 4.0e-16 89.0 128 45.3
Medtr2g450710 Medicago truncatula HOM05D000153 ORTHO05D000118 9.0e-16 87.8 124 50.0
Glyma.09G091900 Glycine max HOM05D000153 ORTHO05D000118 2.0e-15 86.7 131 45.8
TPR.G27699 Trifolium pratense HOM05D000153 ORTHO05D000118 2.6e-15 86.3 122 48.4
Lj6g0018437 Lotus japonicus HOM05D000153 ORTHO05D000118 2.2e-14 83.2 130 44.6
Glyma.15G198600 Glycine max HOM05D000153 ORTHO05D000118 6.4e-14 81.6 131 42.7
Psat0s3336g0080 Pisum sativum HOM05D000153 ORTHO05D000118 2.4e-13 79.7 122 44.3
VMungo1309G1808 Vigna mungo HOM05D000153 ORTHO05D000118 4.2e-13 79.0 128 43.8
Lalb_Chr07g0179411 Lupinus albus HOM05D000153 ORTHO05D000118 9.3e-13 77.8 124 42.7
Phvul.009G211900 Phaseolus vulgaris HOM05D000153 ORTHO05D000118 9.3e-13 77.8 122 44.3
Glyma.17G106800 Glycine max HOM05D000153 ORTHO05D000118 1.2e-12 77.4 124 41.1
Lalb_Chr08g0233601 Lupinus albus HOM05D000153 ORTHO05D000118 2.1e-12 76.6 126 42.9
Glyma.13G164100 Glycine max HOM05D000153 ORTHO05D000118 3.5e-12 75.9 124 40.3
VMungo1215G1770 Vigna mungo HOM05D000153 ORTHO05D000118 3.5e-12 75.9 122 41.0
Phvul.003G173000 Phaseolus vulgaris HOM05D000153 ORTHO05D000118 4.6e-12 75.5 122 39.3
Nn2g12208 Nelumbo nucifera HOM05D000153 ORTHO05D000118 2.3e-11 73.2 124 42.7
Medtr4g116210 Medicago truncatula HOM05D000153 ORTHO05D000118 5.1e-11 72.0 122 40.2
Lalb_Chr13g0301301 Lupinus albus HOM05D000153 ORTHO05D000118 8.7e-11 71.2 122 37.7
Solyc07g007340.3 Solanum lycopersicum HOM05D000153 ORTHO05D000118 1.1e-10 70.9 119 40.3
HanXRQChr09g0274711 Helianthus annuus HOM05D000153 ORTHO05D000118 1.5e-10 70.5 123 39.8
PGR102G2602 Punica granatum HOM05D000153 ORTHO05D000118 2.5e-10 69.7 122 37.7
CANSAT11G2462 Cannabis sativa HOM05D000153 ORTHO05D000118 3.3e-10 69.3 122 37.7
CDE03G0518 Ceratophyllum demersum HOM05D000153 ORTHO05D000118 3.3e-10 69.3 150 33.3
RcHm_v2.0_Chr2g0086971 Rosa chinensis HOM05D000153 ORTHO05D000118 3.3e-10 69.3 123 37.4
PGSC0003DMG401030725 Solanum tuberosum HOM05D000153 ORTHO05D000118 3.3e-10 69.3 119 39.5
Ciclev10007853m.g Citrus clementina HOM05D000153 ORTHO05D000118 4.3e-10 68.9 123 36.6
Eucgr.C00477 Eucalyptus grandis HOM05D000153 ORTHO05D000118 4.3e-10 68.9 127 37.8
GSVIVG01012864001 Vitis vinifera HOM05D000153 ORTHO05D000118 4.3e-10 68.9 122 39.3
Aqoxy7G03584 Aquilegia oxysepala HOM05D000153 ORTHO05D000118 5.6e-10 68.6 122 39.3
Lj4g0011803 Lotus japonicus HOM05D000153 ORTHO05D000118 5.6e-10 68.6 122 40.2
Sopen07g003410 Solanum pennellii HOM05D000153 ORTHO05D000118 5.6e-10 68.6 119 39.5
TWI32G0476 Tripterygium wilfordii HOM05D000153 ORTHO05D000118 5.6e-10 68.6 120 38.3
CiPaw.03G252700 Carya illinoinensis HOM05D000153 ORTHO05D000118 9.6e-10 67.8 122 41.8
HanXRQChr09g0274721 Helianthus annuus HOM05D000153 ORTHO05D000118 9.6e-10 67.8 123 39.0
Nitab4.5_0000550g0090 Nicotiana tabacum HOM05D000153 ORTHO05D000118 9.6e-10 67.8 119 39.5
TPR.G28509 Trifolium pratense HOM05D000153 ORTHO05D000118 9.6e-10 67.8 122 39.3
CAN.G1281.10 Capsicum annuum HOM05D000153 ORTHO05D000118 1.3e-09 67.4 123 39.0
Eucgr.C04108 Eucalyptus grandis HOM05D000153 ORTHO05D000118 1.3e-09 67.4 122 36.9
Peaxi162Scf00088g00049 Petunia axillaris HOM05D000153 ORTHO05D000118 1.3e-09 67.4 119 38.7
Rhsim08G0209900 Rhododendron simsii HOM05D000153 ORTHO05D000118 1.3e-09 67.4 125 37.6
arahy.Tifrunner.gnm1.ann1.B8NP97 Arachis hypogaea HOM05D000153 ORTHO05D000118 1.6e-09 67.0 124 38.7
arahy.Tifrunner.gnm1.ann1.WYWF3X Arachis hypogaea HOM05D000153 ORTHO05D000118 1.6e-09 67.0 124 38.7
FvH4_1g01960 Fragaria vesca HOM05D000153 ORTHO05D000118 1.6e-09 67.0 123 36.6
FAN19G1219 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.6e-09 67.0 123 36.6
FAN19G2037 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.6e-09 67.0 123 36.6
FAN28G1320 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.6e-09 67.0 123 36.6
Hma1.2p1_1264F.1_g271320 Hydrangea macrophylla HOM05D000153 ORTHO05D000118 2.1e-09 66.6 119 38.7
Nitab4.5_0002322g0110 Nicotiana tabacum HOM05D000153 ORTHO05D000118 2.1e-09 66.6 123 39.0
Potri.006G060900 Populus trichocarpa HOM05D000153 ORTHO05D000118 2.1e-09 66.6 123 38.2
Prupe.7G257000 Prunus persica HOM05D000153 ORTHO05D000118 2.1e-09 66.6 129 35.7
MD02G1017800 Malus domestica HOM05D000153 ORTHO05D000118 2.8e-09 66.2 122 36.9
vmacro16870 Vaccinium macrocarpon HOM05D000153 ORTHO05D000118 2.8e-09 66.2 140 34.3
Ah.01g020320 Amaranthus hybridus HOM05D000153 ORTHO05D000118 3.7e-09 65.9 118 34.7
Haze_25440 Corylus avellana HOM05D000153 ORTHO05D000118 3.7e-09 65.9 126 37.3
Dinv41439 Davidia involucrata HOM05D000153 ORTHO05D000118 3.7e-09 65.9 119 37.8
Actinidia38690 Actinidia chinensis HOM05D000153 ORTHO05D000118 4.8e-09 65.5 123 37.4
Haze_16611 Corylus avellana HOM05D000153 ORTHO05D000118 4.8e-09 65.5 123 36.6
Dinv38147 Davidia involucrata HOM05D000153 ORTHO05D000118 4.8e-09 65.5 109 39.4
FAN26G0426 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.8e-09 65.5 123 35.8
Atru.chr1.2856 Acer truncatum HOM05D000153 ORTHO05D000118 6.2e-09 65.1 123 39.8
Actinidia18224 Actinidia chinensis HOM05D000153 ORTHO05D000118 6.2e-09 65.1 145 32.4
ECA232G2368 Erigeron canadensis HOM05D000153 ORTHO05D000118 6.2e-09 65.1 123 38.2
Gohir.A05G012700 Gossypium hirsutum HOM05D000153 ORTHO05D000118 6.2e-09 65.1 122 36.1
Gohir.D05G013800 Gossypium hirsutum HOM05D000153 ORTHO05D000118 6.2e-09 65.1 122 36.1
Gorai.009G013800 Gossypium raimondii HOM05D000153 ORTHO05D000118 6.2e-09 65.1 122 36.1
Nitab4.5_0002845g0090 Nicotiana tabacum HOM05D000153 ORTHO05D000118 6.2e-09 65.1 119 38.7
Oeu055928.1 Olea europaea HOM05D000153 ORTHO05D000118 8.1e-09 64.7 123 35.8
TWI12G1147 Tripterygium wilfordii HOM05D000153 ORTHO05D000118 8.1e-09 64.7 123 39.0
vmacro06100 Vaccinium macrocarpon HOM05D000153 ORTHO05D000118 8.1e-09 64.7 123 37.4
Atru.chr7.295 Acer truncatum HOM05D000153 ORTHO05D000118 1.1e-08 64.3 122 38.5
FAN23G2549 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.1e-08 64.3 123 35.8
Manes.06G043801 Manihot esculenta HOM05D000153 ORTHO05D000118 1.1e-08 64.3 123 36.6
Rhsim03G0255500 Rhododendron simsii HOM05D000153 ORTHO05D000118 1.1e-08 64.3 123 36.6
TAR383G0953 Trochodendron aralioides HOM05D000153 ORTHO05D000118 1.1e-08 64.3 122 38.5
Sabra01G0158500 Salix brachista HOM05D000153 ORTHO05D000118 1.4e-08 63.9 125 36.8
Sabra06G0043800 Salix brachista HOM05D000153 ORTHO05D000118 1.4e-08 63.9 123 35.8
VMungo1080G0630 Vigna mungo HOM05D000153 ORTHO05D000118 1.4e-08 63.9 125 34.4
GSVIVG01017494001 Vitis vinifera HOM05D000153 ORTHO05D000118 1.4e-08 63.9 123 38.2
Cfa001929 Carpinus fangiana HOM05D000153 ORTHO05D000118 1.8e-08 63.5 119 36.1
Nitab4.5_0006648g0010 Nicotiana tabacum HOM05D000153 ORTHO05D000118 1.8e-08 63.5 123 37.4
TAR625G0536 Trochodendron aralioides HOM05D000153 ORTHO05D000118 1.8e-08 63.5 121 38.0
vmacro19026 Vaccinium macrocarpon HOM05D000153 ORTHO05D000118 1.8e-08 63.5 125 36.8
Ah.09g224060 Amaranthus hybridus HOM05D000153 ORTHO05D000118 2.4e-08 63.2 124 35.5
Potri.001G204700 Populus trichocarpa HOM05D000153 ORTHO05D000118 2.4e-08 63.2 125 37.6
QL02p090874 Quercus lobata HOM05D000153 ORTHO05D000118 2.4e-08 63.2 122 36.9
Cpa.g.sc1218.2 Carica papaya HOM05D000153 ORTHO05D000118 3.1e-08 62.8 119 34.5
Cfa002257 Carpinus fangiana HOM05D000153 ORTHO05D000118 3.1e-08 62.8 122 36.1
DCAR_002339 Daucus carota HOM05D000153 ORTHO05D000118 3.1e-08 62.8 119 37.0
DCAR_021359 Daucus carota HOM05D000153 ORTHO05D000118 3.1e-08 62.8 119 36.1
DCAR_017770 Daucus carota HOM05D000153 ORTHO05D000118 4.0e-08 62.4 125 36.8
Oeu058589.3 Olea europaea HOM05D000153 ORTHO05D000118 4.0e-08 62.4 119 37.0
SalBow7G1544 Salvia bowleyana HOM05D000153 ORTHO05D000118 4.0e-08 62.4 119 37.0
TWI75G0315 Tripterygium wilfordii HOM05D000153 ORTHO05D000118 4.0e-08 62.4 129 37.2
ATR0767G061 Amborella trichopoda HOM05D000153 ORTHO05D000118 5.3e-08 62.0 123 37.4
COL.COLO4_24145 Corchorus olitorius HOM05D000153 ORTHO05D000118 5.3e-08 62.0 125 36.0
Manes.14G121100 Manihot esculenta HOM05D000153 ORTHO05D000118 5.3e-08 62.0 123 36.6
Oeu005936.1 Olea europaea HOM05D000153 ORTHO05D000118 5.3e-08 62.0 119 33.6
PSO782G2050 Papaver somniferum HOM05D000153 ORTHO05D000118 5.3e-08 62.0 126 37.3
Rhsim12G0189100 Rhododendron simsii HOM05D000153 ORTHO05D000118 5.3e-08 62.0 144 33.3
Thecc.09G138700 Theobroma cacao HOM05D000153 ORTHO05D000118 5.3e-08 62.0 122 37.7
Actinidia04674 Actinidia chinensis HOM05D000153 ORTHO05D000118 6.9e-08 61.6 155 31.0
MSTRG.4696 Avicennia marina HOM05D000153 ORTHO05D000118 6.9e-08 61.6 119 37.8
Sc10g0006080 Simmondsia chinensis HOM05D000153 ORTHO05D000118 6.9e-08 61.6 129 34.9
CSS0017700 Camellia sinensis var. sinensis HOM05D000153 ORTHO05D000118 9.0e-08 61.2 122 35.2
CSS0049129 Camellia sinensis var. sinensis HOM05D000153 ORTHO05D000118 9.0e-08 61.2 122 35.2
Lj3g0009027 Lotus japonicus HOM05D000153 ORTHO05D000118 9.0e-08 61.2 125 34.4
MBI14_g23588_MAGBIO Magnolia biondii HOM05D000153 ORTHO05D000118 9.0e-08 61.2 122 36.1
SGA_v2.0_scaffold5G02734 Striga asiatica HOM05D000153 ORTHO05D000118 9.0e-08 61.2 119 35.3
CANSAT56G1469 Cannabis sativa HOM05D000153 ORTHO05D000118 1.2e-07 60.8 119 36.1
HanXRQChr08g0234301 Helianthus annuus HOM05D000153 ORTHO05D000118 1.2e-07 60.8 123 36.6
Ah.01g020310 Amaranthus hybridus HOM05D000153 ORTHO05D000118 1.5e-07 60.5 123 35.0
HanXRQChr16g0499831 Helianthus annuus HOM05D000153 ORTHO05D000118 1.5e-07 60.5 123 35.8
Lsat_1_v5_gn_5_8401 Lactuca sativa HOM05D000153 ORTHO05D000118 1.5e-07 60.5 123 36.6
MBI15_g22215_MAGBIO Magnolia biondii HOM05D000153 ORTHO05D000118 1.5e-07 60.5 122 36.1
Atru.chr1.2854 Acer truncatum HOM05D000153 ORTHO05D000118 2.0e-07 60.1 123 38.2
arahy.Tifrunner.gnm1.ann1.5LXM7S Arachis hypogaea HOM05D000153 ORTHO05D000118 2.6e-07 59.7 127 36.2
arahy.Tifrunner.gnm1.ann1.FRL39W Arachis hypogaea HOM05D000153 ORTHO05D000118 2.6e-07 59.7 127 36.2
AUR62011233 Chenopodium quinoa HOM05D002817 ORTHO05D003138 2.6e-07 59.7 123 33.3
AUR62020000 Chenopodium quinoa HOM05D002817 ORTHO05D000118 2.6e-07 59.7 123 33.3
Gohir.A10G072200 Gossypium hirsutum HOM05D000153 ORTHO05D000118 2.6e-07 59.7 125 35.2
Gorai.011G085700 Gossypium raimondii HOM05D000153 ORTHO05D000118 2.6e-07 59.7 125 35.2
Lj5A76T80 Lonicera japonica HOM05D000153 ORTHO05D000118 2.6e-07 59.7 119 35.3
Psat5g303800 Pisum sativum HOM05D000153 ORTHO05D000118 2.6e-07 59.7 124 35.5
Solyc03g117300.4 Solanum lycopersicum HOM05D000153 ORTHO05D000118 2.6e-07 59.7 123 36.6
TAR626G1896 Trochodendron aralioides HOM05D000153 ORTHO05D000118 2.6e-07 59.7 121 34.7
Cpa.g.sc10.134 Carica papaya HOM05D000153 ORTHO05D000118 3.4e-07 59.3 129 35.7
Oeu005928.1 Olea europaea HOM05D000153 ORTHO05D000118 3.4e-07 59.3 115 34.8
Sopen03g036190 Solanum pennellii HOM05D000153 ORTHO05D000118 3.4e-07 59.3 123 36.6
unitig_899.g14788 Utricularia gibba HOM05D000153 ORTHO05D000118 3.4e-07 59.3 119 34.5
Gohir.D10G078900 Gossypium hirsutum HOM05D000153 ORTHO05D000118 4.5e-07 58.9 125 35.2
PGR102G2993 Punica granatum HOM05D000153 ORTHO05D000118 4.5e-07 58.9 119 35.3
Hund21598 Selenicereus undatus HOM05D000153 ORTHO05D000118 4.5e-07 58.9 123 34.1
Duzib192G0369 Durio zibethinus HOM05D000153 ORTHO05D000118 5.8e-07 58.5 119 36.1
Lsat_1_v5_gn_4_88241 Lactuca sativa HOM05D000153 ORTHO05D000118 5.8e-07 58.5 123 35.8
CSS0016370 Camellia sinensis var. sinensis HOM05D000153 ORTHO05D000118 7.6e-07 58.2 118 39.0
CSS0020204 Camellia sinensis var. sinensis HOM05D000153 ORTHO05D000118 7.6e-07 58.2 117 36.8
Duzib235G1323 Durio zibethinus HOM05D000153 ORTHO05D000118 7.6e-07 58.2 123 35.8
Potri.003G016725 Populus trichocarpa HOM05D000153 ORTHO05D000118 7.6e-07 58.2 118 33.9
Hund06542 Selenicereus undatus HOM05D000153 ORTHO05D000118 7.6e-07 58.2 123 31.7
PGSC0003DMG400014135 Solanum tuberosum HOM05D000153 ORTHO05D000118 7.6e-07 58.2 123 35.8
EL10Ac8g18796 Beta vulgaris HOM05D000153 ORTHO05D000118 9.9e-07 57.8 123 31.7
Hund09314 Selenicereus undatus HOM05D000153 ORTHO05D000118 9.9e-07 57.8 123 33.3
AUR62016587 Chenopodium quinoa HOM05D000153 ORTHO05D000118 1.3e-06 57.4 118 33.1
SalBow6G6836 Salvia bowleyana HOM05D000153 ORTHO05D000118 1.3e-06 57.4 123 33.3
CAN.G407.32 Capsicum annuum HOM05D000153 ORTHO05D000118 1.7e-06 57.0 123 35.0
ECA246G3194 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.7e-06 57.0 123 35.0
Prupe.3G093500 Prunus persica HOM05D000153 ORTHO05D000118 1.7e-06 57.0 129 33.3
Eucgr.F03926 Eucalyptus grandis HOM05D000153 ORTHO05D000118 2.2e-06 56.6 129 34.1
Peaxi162Scf00332g00222 Petunia axillaris HOM05D000153 ORTHO05D000118 2.2e-06 56.6 123 35.0
RcHm_v2.0_Chr2g0134291 Rosa chinensis HOM05D000153 ORTHO05D000118 2.2e-06 56.6 123 33.3
Sabra03G0016200 Salix brachista HOM05D000153 ORTHO05D000118 2.2e-06 56.6 119 33.6
Thecc.06G033800 Theobroma cacao HOM05D000153 ORTHO05D000118 2.2e-06 56.6 119 35.3
HanXRQChr05g0156831 Helianthus annuus HOM05D000153 ORTHO05D000118 2.9e-06 56.2 123 33.3
QL05p032920 Quercus lobata HOM05D000153 ORTHO05D000118 2.9e-06 56.2 125 32.8
THA.LOC104812458 Tarenaya hassleriana HOM05D000153 ORTHO05D000118 3.8e-06 55.8 119 31.9
FAN05G4984 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.9e-06 55.5 123 32.5
FAN09G0341 Fragaria x ananassa HOM05D000153 ORTHO05D000118 4.9e-06 55.5 123 32.5
Cc04_g04730 Coffea canephora HOM05D000153 ORTHO05D000118 6.4e-06 55.1 119 34.5
FvH4_6g29100 Fragaria vesca HOM05D000153 ORTHO05D000118 6.4e-06 55.1 123 32.5
FAN14G1752 Fragaria x ananassa HOM05D000153 ORTHO05D000118 6.4e-06 55.1 123 32.5
Potri.003G012300 Populus trichocarpa HOM05D000153 ORTHO05D000118 6.4e-06 55.1 139 31.7
MD17G1217900 Malus domestica HOM05D000153 ORTHO05D000118 8.4e-06 54.7 125 33.6


User provided reference genes

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