Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.3e-299 1032.3 527 100.0
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 3.5e-297 1024.2 527 98.3
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 5.6e-239 830.9 541 77.6
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 2.3e-232 808.9 537 76.5
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 2.3e-232 808.9 534 76.2
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 2.8e-230 802.0 533 75.0
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 1.8e-229 799.3 536 76.7
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 2.4e-229 798.9 534 74.3
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 5.3e-229 797.7 493 80.5
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 3.8e-227 791.6 533 75.2
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.0e-224 783.5 533 74.3
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 9.6e-223 776.9 461 81.3
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 5.1e-216 754.6 490 75.1
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 4.8e-214 748.0 473 75.1
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 4.8e-214 748.0 466 77.3
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 4.8e-214 748.0 535 68.4
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.4e-213 746.5 490 72.7
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 9.0e-213 743.8 483 73.9
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.5e-212 743.0 539 69.4
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 1.3e-211 740.0 533 68.5
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 3.8e-211 738.4 485 73.8
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 3.8e-211 738.4 486 72.6
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 6.5e-211 737.6 497 72.2
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 2.5e-210 735.7 480 72.9
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 1.2e-209 733.4 541 68.2
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 1.6e-209 733.0 486 72.2
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 2.7e-209 732.3 467 73.4
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 3.5e-209 731.9 536 67.4
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.5e-209 731.9 483 72.5
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 4.6e-209 731.5 496 71.8
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 6.0e-209 731.1 475 73.9
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 1.0e-208 730.3 488 71.5
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 1.3e-208 729.9 477 72.3
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 3.0e-208 728.8 472 74.2
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 3.9e-208 728.4 515 69.3
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.9e-208 728.4 502 70.3
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 5.1e-208 728.0 483 71.6
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 8.7e-208 727.2 534 68.0
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 8.7e-208 727.2 475 73.3
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 8.7e-208 727.2 488 72.1
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 1.1e-207 726.9 482 72.2
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 1.5e-207 726.5 462 72.5
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.9e-207 726.1 472 73.9
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.5e-207 725.7 527 67.4
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 3.3e-207 725.3 483 72.0
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 4.3e-207 724.9 470 73.6
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 4.3e-207 724.9 465 74.6
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 7.4e-207 724.2 463 73.9
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 7.4e-207 724.2 475 72.8
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 9.7e-207 723.8 487 71.3
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 9.7e-207 723.8 534 67.4
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 1.3e-206 723.4 456 74.8
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 1.6e-206 723.0 458 75.1
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 4.8e-206 721.5 463 73.4
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 6.3e-206 721.1 484 72.3
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 8.2e-206 720.7 463 74.3
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 8.2e-206 720.7 484 72.5
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 8.2e-206 720.7 484 71.9
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 1.4e-205 719.9 485 71.5
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 1.8e-205 719.5 459 75.2
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.8e-205 719.5 484 72.1
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 1.8e-205 719.5 484 72.1
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 5.3e-205 718.0 462 73.8
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 5.3e-205 718.0 489 71.0
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 3.4e-204 715.3 494 69.4
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 2.2e-203 712.6 472 72.0
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 5.0e-203 711.4 461 74.0
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 6.5e-203 711.1 486 70.8
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 3.2e-202 708.8 533 66.2
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 4.2e-202 708.4 554 64.4
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 9.4e-202 707.2 465 72.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.6e-201 706.4 465 73.1
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 2.1e-201 706.1 470 73.4
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 2.1e-201 706.1 480 71.7
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 2.3e-200 702.6 452 72.3
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 3.9e-200 701.8 471 70.1
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 5.1e-200 701.4 514 67.1
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 1.1e-199 700.3 504 67.7
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 2.5e-199 699.1 474 70.9
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 4.8e-198 694.9 477 69.2
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 6.3e-198 694.5 511 66.9
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 3.1e-197 692.2 489 68.1
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 2.0e-196 689.5 456 70.2
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.4e-196 688.7 459 71.7
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 4.5e-196 688.3 472 69.1
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 7.7e-196 687.6 458 70.3
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 2.2e-195 686.0 455 70.5
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 4.4e-191 671.8 457 70.9
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 2.4e-189 666.0 459 69.1
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 9.1e-189 664.1 485 66.2
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 8.8e-184 647.5 445 70.3
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 9.7e-183 644.0 471 65.8
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.1e-178 630.6 463 66.7
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 4.8e-174 615.1 461 65.9
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 3.5e-172 609.0 454 62.1
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.6e-169 600.1 500 59.8
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 4.0e-168 595.5 491 59.7
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 3.4e-167 592.4 367 75.7
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 2.8e-166 589.3 458 61.4
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 7.7e-164 581.3 476 59.2
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 5.2e-160 568.5 495 58.0
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 5.6e-154 548.5 428 64.7
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 4.6e-148 528.9 381 68.2
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 9.5e-138 494.6 478 55.9
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 6.2e-129 465.3 321 71.0
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 7.9e-116 421.8 455 47.9
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 5.6e-114 415.6 290 70.7
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 2.7e-108 396.7 480 46.0
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.8e-99 367.5 280 66.1
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.0e-91 341.7 480 41.7
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 7.2e-77 292.4 456 38.4
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 1.7e-38 164.9 100 74.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 2.5e-37 161.0 231 36.8
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 2.9e-33 147.5 95 73.7
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 2.9e-33 147.5 95 73.7
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 2.9e-33 147.5 95 73.7
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 2.9e-33 147.5 95 73.7
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 6.6e-22 109.8 285 30.5
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 2.5e-21 107.8 78 66.7
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 2.2e-17 94.7 64 70.3
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 8.4e-09 66.2 48 72.9
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 7.1e-08 63.2 40 67.5
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.6e-07 62.0 41 75.6
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 2.1e-07 61.6 76 47.4


User provided reference genes

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