Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 3.2e-168 595.1 323 100.0
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 1.6e-111 406.8 326 72.7
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 2.7e-111 406.0 325 72.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 4.7e-111 405.2 325 72.0
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 7.9e-111 404.4 325 72.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 5.2e-110 401.7 324 71.3
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 9.7e-109 397.5 325 69.2
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 2.4e-107 392.9 323 69.0
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 5.3e-107 391.7 325 69.2
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 7.7e-106 387.9 326 68.7
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 5.0e-105 385.2 343 66.2
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 6.1e-103 378.3 302 70.9
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.4e-102 377.1 328 68.3
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 4.8e-100 368.6 325 66.5
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.0e-97 360.9 325 65.2
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 1.3e-97 360.5 310 67.1
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.2e-97 359.8 329 63.2
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 6.5e-97 358.2 326 64.4
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 6.5e-97 358.2 325 65.2
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.9e-96 356.7 326 64.4
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.5e-96 356.3 325 64.6
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 4.2e-96 355.5 319 64.3
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.2e-95 354.0 327 63.3
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.6e-95 353.6 325 63.7
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.1e-95 353.2 325 63.1
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.0e-94 350.9 325 64.9
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.8e-94 350.1 325 63.1
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.2e-93 347.4 325 63.1
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.5e-93 347.1 325 62.8
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 9.8e-93 344.4 319 63.6
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 6.3e-92 341.7 325 63.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.8e-91 340.1 325 62.8
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.1e-91 339.3 325 62.8
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 7.0e-91 338.2 327 62.7
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.0e-91 338.2 325 62.5
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 9.1e-91 337.8 326 61.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.0e-90 336.7 322 61.8
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 2.0e-90 336.7 325 62.2
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.7e-90 336.3 327 62.4
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 2.7e-90 336.3 327 61.2
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.5e-90 335.5 290 67.2
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 4.5e-90 335.5 326 62.0
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 5.0e-89 332.0 332 61.1
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 1.9e-88 330.1 325 62.5
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.5e-88 329.7 328 61.9
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 3.2e-88 329.3 327 60.9
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 4.2e-88 328.9 321 62.3
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 9.5e-88 327.8 359 57.7
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 1.2e-87 327.4 326 60.1
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 1.0e-86 324.3 328 60.1
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.2e-86 322.0 325 59.4
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 8.9e-86 321.2 324 60.5
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 2.0e-85 320.1 333 59.5
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.7e-84 317.0 325 59.1
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.8e-84 316.2 388 52.8
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 3.7e-84 315.8 326 58.6
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 6.3e-84 315.1 331 57.7
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 8.3e-84 314.7 335 57.3
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.8e-83 313.5 326 58.6
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 4.1e-83 312.4 290 64.1
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 7.0e-83 311.6 325 57.8
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 4.5e-82 308.9 351 56.7
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 7.8e-82 308.1 320 59.7
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.7e-81 307.0 324 58.3
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.3e-81 306.6 325 58.2
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 2.3e-81 306.6 386 51.8
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 2.9e-81 306.2 322 58.7
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 5.0e-81 305.4 327 56.0
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 5.0e-81 305.4 321 57.3
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 5.6e-80 302.0 322 57.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 5.6e-80 302.0 323 57.6
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 5.6e-80 302.0 323 57.6
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 7.3e-80 301.6 322 57.8
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 9.5e-80 301.2 293 60.4
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.6e-79 300.4 284 62.3
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 2.1e-79 300.1 322 57.8
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.1e-79 300.1 325 56.9
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.1e-79 300.1 325 56.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 6.1e-79 298.5 325 56.6
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.4e-78 297.4 328 55.8
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.8e-78 297.0 292 59.2
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 8.9e-78 294.7 341 54.8
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 2.0e-77 293.5 323 55.7
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 2.6e-77 293.1 326 57.1
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 7.5e-77 291.6 330 56.1
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 9.8e-77 291.2 334 55.7
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.7e-76 290.4 321 56.7
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.7e-76 290.4 325 56.0
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 3.7e-76 289.3 292 59.2
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 3.7e-76 289.3 321 57.3
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 4.9e-76 288.9 326 55.5
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.1e-75 285.8 326 54.9
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.2e-74 284.3 327 55.7
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.0e-74 283.5 283 59.4
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.5e-74 282.7 325 55.4
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 3.5e-74 282.7 316 56.6
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 4.6e-74 282.3 244 66.4
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.0e-73 279.6 380 49.5
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 7.3e-72 275.0 323 55.1
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 7.3e-72 275.0 326 54.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.6e-71 273.9 286 57.0
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 3.4e-69 266.2 324 52.8
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.0e-65 254.6 136 100.0
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.3e-65 254.2 317 53.3
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.1e-64 251.1 270 59.6
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.9e-64 250.4 285 53.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 7.3e-64 248.4 250 59.6
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.6e-63 247.3 229 65.9
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 4.6e-58 229.2 176 71.0
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.0e-57 228.0 265 55.8
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.7e-57 227.3 322 49.7
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 2.1e-55 220.3 218 62.8
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 3.8e-52 209.5 336 47.9
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 1.3e-49 201.1 294 46.9
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.9e-48 197.2 184 63.0
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 6.9e-46 188.7 218 58.3
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 4.2e-43 179.5 206 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.5e-42 176.4 272 40.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.5e-42 176.4 174 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.6e-42 176.0 272 40.8
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 3.0e-41 173.3 297 39.1
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 2.4e-38 163.7 252 41.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.4e-35 153.7 268 36.9
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.4e-35 152.5 119 70.6
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.2e-34 151.4 163 55.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 3.0e-33 146.7 261 41.0
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 6.7e-33 145.6 119 64.7
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 3.2e-27 126.7 81 86.4
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.2e-27 126.7 242 37.2
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 1.9e-24 117.5 130 52.3
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 4.8e-23 112.8 176 44.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.6e-21 107.1 119 52.1
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.2e-19 100.1 98 59.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 3.9e-17 93.2 106 50.9
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.1e-16 91.7 106 50.0
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 5.7e-16 89.4 106 50.0
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 3.6e-10 70.1 66 57.6
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 1.4e-06 58.2 50 62.0
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 1.4e-06 58.2 50 62.0
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 1.4e-06 58.2 50 62.0
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 1.4e-06 58.2 50 62.0
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 9.1e-06 55.5 213 24.9


User provided reference genes

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