Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 3.0e-111 405.2 206 100.0
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 4.1e-60 235.3 129 95.3
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 2.1e-56 223.0 127 92.1
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 5.7e-30 135.2 123 58.5
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 1.7e-29 133.7 124 56.5
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 8.3e-29 131.3 114 59.6
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 2.4e-28 129.8 122 55.7
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 4.1e-28 129.0 119 58.0
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 1.6e-27 127.1 118 58.5
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 2.7e-27 126.3 146 50.0
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 7.8e-27 124.8 120 52.5
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 1.2e-24 117.5 117 53.8
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 2.0e-22 110.2 111 52.3
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 7.5e-22 108.2 107 52.3
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 4.9e-21 105.5 105 54.3
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 1.8e-20 103.6 105 53.3
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 3.2e-20 102.8 103 53.4
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 4.1e-20 102.4 125 44.0
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 1.6e-19 100.5 103 52.4
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.6e-19 99.0 106 49.1
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 6.0e-19 98.6 106 49.1
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 7.8e-19 98.2 147 42.2
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 1.0e-18 97.8 125 42.4
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.3e-18 97.4 96 52.1
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.7e-18 97.1 96 53.1
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.7e-18 97.1 96 52.1
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 5.0e-18 95.5 96 51.0
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 1.1e-17 94.4 100 52.0
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 1.1e-17 94.4 96 49.0
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.1e-17 94.4 103 46.6
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.5e-17 94.0 103 52.4
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 7.3e-17 91.7 103 51.5
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 7.3e-17 91.7 118 44.9
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 1.2e-16 90.9 103 47.6
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.6e-16 90.5 103 51.5
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 2.1e-16 90.1 112 45.5
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 2.8e-16 89.7 131 43.5
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 3.6e-16 89.4 102 46.1
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 4.7e-16 89.0 87 49.4
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 8.0e-16 88.2 131 42.7
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.1e-15 87.8 102 49.0
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 1.1e-15 87.8 101 46.5
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 1.4e-15 87.4 108 46.3
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.8e-15 87.0 104 46.2
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.8e-15 87.0 105 44.8
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.8e-15 87.0 103 45.6
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 1.8e-15 87.0 83 55.4
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 4.0e-15 85.9 107 43.9
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 5.2e-15 85.5 102 48.0
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 6.8e-15 85.1 100 45.0
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 6.8e-15 85.1 90 44.4
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 6.8e-15 85.1 106 47.2
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 8.9e-15 84.7 100 45.0
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.2e-14 84.3 102 46.1
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 2.0e-14 83.6 101 45.5
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 2.0e-14 83.6 105 42.9
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 2.6e-14 83.2 102 45.1
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 2.6e-14 83.2 109 44.0
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 3.4e-14 82.8 100 45.0
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 3.4e-14 82.8 100 45.0
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 5.8e-14 82.0 120 40.8
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 7.5e-14 81.6 100 44.0
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.3e-13 80.9 137 37.2
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.9e-13 79.7 104 44.2
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 4.9e-13 79.0 102 46.1
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 6.4e-13 78.6 84 50.0
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 6.4e-13 78.6 96 47.9
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 8.3e-13 78.2 101 42.6
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.1e-12 77.8 100 46.0
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 1.9e-12 77.0 100 46.0
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.9e-12 77.0 100 46.0
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 4.1e-12 75.9 114 43.0
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 5.4e-12 75.5 125 36.0
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 5.4e-12 75.5 103 41.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 9.2e-12 74.7 100 45.0
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 1.2e-11 74.3 125 36.0
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.2e-11 74.3 100 43.0
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 1.6e-11 73.9 101 43.6
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.6e-11 73.9 86 46.5
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.5e-11 72.8 78 50.0
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 6.0e-11 72.0 101 43.6
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.0e-10 69.7 67 53.7
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 3.0e-10 69.7 67 53.7
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 5.0e-10 68.9 87 46.0
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 1.9e-09 67.0 94 41.5
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 2.5e-09 66.6 89 46.1
Ca_31281_v3 Cicer arietinum L. HOM05D007217 ORTHO05D009092 3.3e-09 66.2 63 52.4
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 4.3e-09 65.9 64 51.6
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 5.6e-09 65.5 65 44.6
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 1.2e-08 64.3 83 39.8
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.2e-08 64.3 89 40.4
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 2.1e-08 63.5 69 43.5
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 2.8e-08 63.2 74 41.9
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 6.2e-08 62.0 77 46.8
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 6.2e-08 62.0 104 35.6
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 3.1e-07 59.7 63 46.0
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 5.2e-07 58.9 130 34.6
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 5.2e-07 58.9 90 42.2
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 6.8e-07 58.5 64 48.4
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 8.9e-07 58.2 82 39.0
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.5e-06 57.4 66 43.9
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 7.5e-06 55.1 62 46.8


User provided reference genes

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