Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YYI95N Arachis hypogaea HOM05D015477 ORTHO05D006437 4.4e-80 301.2 150 100.0
arahy.Tifrunner.gnm1.ann1.DWYC5U Arachis hypogaea HOM05D004224 ORTHO05D006437 2.8e-42 175.6 150 67.3
arahy.Tifrunner.gnm1.ann1.5JAS6J Arachis hypogaea HOM05D004224 ORTHO05D006437 5.8e-32 141.4 110 70.9
arahy.Tifrunner.gnm1.ann1.10WMUN Arachis hypogaea HOM05D015477 ORTHO05D082662 5.8e-24 114.8 80 73.8
arahy.Tifrunner.gnm1.ann1.39WU8S Arachis hypogaea HOM05D004224 ORTHO05D006437 7.1e-22 107.8 64 89.1
arahy.Tifrunner.gnm1.ann1.E51YXR Arachis hypogaea HOM05D015477 ORTHO05D086599 6.0e-21 104.8 56 92.9
arahy.Tifrunner.gnm1.ann1.96AXQD Arachis hypogaea HOM05D004224 ORTHO05D006437 1.1e-19 100.5 55 90.9
arahy.Tifrunner.gnm1.ann1.GG41TB Arachis hypogaea HOM05D004224 ORTHO05D006437 1.9e-19 99.8 55 92.7
arahy.Tifrunner.gnm1.ann1.V7950Q Arachis hypogaea HOM05D004224 ORTHO05D006437 3.3e-19 99.0 55 90.9
arahy.Tifrunner.gnm1.ann1.D5L463 Arachis hypogaea HOM05D004224 ORTHO05D086544 8.2e-18 94.4 102 55.9
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 4.1e-17 92.0 53 83.0
Thecc.01G197800 Theobroma cacao HOM05D003366 ORTHO05D006437 6.9e-17 91.3 53 86.8
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 9.0e-17 90.9 53 84.9
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 9.0e-17 90.9 53 84.9
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 2.0e-16 89.7 53 81.1
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 2.6e-16 89.4 53 84.9
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 4.5e-16 88.6 53 83.0
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 5.9e-16 88.2 53 81.1
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 7.6e-16 87.8 53 81.1
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 7.6e-16 87.8 53 81.1
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 7.6e-16 87.8 53 81.1
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 7.6e-16 87.8 53 84.9
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 1.0e-15 87.4 53 81.1
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 1.0e-15 87.4 53 81.1
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 1.3e-15 87.0 53 81.1
Gohir.A07G163700 Gossypium hirsutum HOM05D004224 ORTHO05D006437 1.3e-15 87.0 53 81.1
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 1.3e-15 87.0 53 81.1
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 1.3e-15 87.0 53 81.1
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 1.3e-15 87.0 53 77.4
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 1.7e-15 86.7 53 79.2
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 2.2e-15 86.3 53 79.2
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 2.2e-15 86.3 53 75.5
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 2.9e-15 85.9 72 62.5
arahy.Tifrunner.gnm1.ann1.D1ZZI9 Arachis hypogaea HOM05D015477 ORTHO05D087716 2.9e-15 85.9 41 100.0
arahy.Tifrunner.gnm1.ann1.WSW4WD Arachis hypogaea HOM05D015477 ORTHO05D082753 2.9e-15 85.9 41 100.0
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 2.9e-15 85.9 71 64.8
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 2.9e-15 85.9 53 83.0
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 2.9e-15 85.9 53 79.2
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 3.8e-15 85.5 53 75.5
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 3.8e-15 85.5 53 77.4
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 5.0e-15 85.1 52 76.9
Nitab4.5_0006992g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 5.0e-15 85.1 53 75.5
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 5.0e-15 85.1 53 81.1
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 5.0e-15 85.1 53 79.2
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 6.5e-15 84.7 71 67.6
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 6.5e-15 84.7 53 81.1
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 6.5e-15 84.7 53 81.1
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 6.5e-15 84.7 53 75.5
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 6.5e-15 84.7 53 75.5
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 6.5e-15 84.7 53 75.5
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 8.5e-15 84.3 53 77.4
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 8.5e-15 84.3 53 73.6
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 8.5e-15 84.3 53 79.2
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 8.5e-15 84.3 53 75.5
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 1.1e-14 84.0 102 49.0
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 1.1e-14 84.0 53 75.5
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 1.1e-14 84.0 53 75.5
TPR.G16163 Trifolium pratense HOM05D004224 ORTHO05D006437 1.1e-14 84.0 52 78.8
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 1.4e-14 83.6 53 77.4
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 1.4e-14 83.6 53 77.4
Lalb_Chr04g0259121 Lupinus albus HOM05D004224 ORTHO05D006437 1.4e-14 83.6 53 81.1
arahy.Tifrunner.gnm1.ann1.8FB0VI Arachis hypogaea HOM05D015477 ORTHO05D087021 1.9e-14 83.2 41 95.1
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 1.9e-14 83.2 53 75.5
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 1.9e-14 83.2 53 77.4
FAN09G3658 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.9e-14 83.2 53 77.4
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 2.5e-14 82.8 52 75.0
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 2.5e-14 82.8 53 77.4
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 2.5e-14 82.8 53 77.4
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 3.2e-14 82.4 53 79.2
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 3.2e-14 82.4 71 62.0
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 3.2e-14 82.4 53 71.7
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 3.2e-14 82.4 52 75.0
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 3.2e-14 82.4 53 75.5
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 3.2e-14 82.4 53 75.5
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 4.2e-14 82.0 53 81.1
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 5.5e-14 81.6 55 72.7
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 5.5e-14 81.6 55 72.7
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 5.5e-14 81.6 53 73.6
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 7.2e-14 81.3 53 73.6
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 7.2e-14 81.3 53 73.6
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 9.3e-14 80.9 53 73.6
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 9.3e-14 80.9 53 75.5
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 9.3e-14 80.9 53 73.6
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 1.2e-13 80.5 53 71.7
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 1.6e-13 80.1 71 60.6
BraA01t04368Z Brassica rapa HOM05D004224 ORTHO05D006437 1.6e-13 80.1 71 60.6
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 2.1e-13 79.7 52 69.2
AUR62029126 Chenopodium quinoa HOM05D004224 ORTHO05D006437 2.1e-13 79.7 52 69.2
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 2.1e-13 79.7 53 73.6
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 2.1e-13 79.7 53 75.5
arahy.Tifrunner.gnm1.ann1.XN9NFE Arachis hypogaea HOM05D015477 ORTHO05D085507 3.6e-13 79.0 51 78.4
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 3.6e-13 79.0 71 60.6
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 4.6e-13 78.6 53 73.6
AUR62035877 Chenopodium quinoa HOM05D004224 ORTHO05D006437 6.1e-13 78.2 52 67.3
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 6.1e-13 78.2 53 69.8
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 7.9e-13 77.8 71 57.7
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 1.0e-12 77.4 71 57.7
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 1.8e-12 76.6 71 57.7
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 1.8e-12 76.6 53 64.2
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 3.0e-12 75.9 71 59.2
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 3.9e-12 75.5 53 67.9
arahy.Tifrunner.gnm1.ann1.NI6VNY Arachis hypogaea HOM05D004224 ORTHO05D006437 5.1e-12 75.1 70 57.1
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 6.7e-12 74.7 53 62.3
Hund08285 Selenicereus undatus HOM05D004224 ORTHO05D006437 1.9e-11 73.2 53 58.5
arahy.Tifrunner.gnm1.ann1.09D7IH Arachis hypogaea HOM05D004224 ORTHO05D011012 3.3e-11 72.4 96 47.9
Zm00001eb189210 Zea mays HOM05D004224 ORTHO05D006437 3.3e-11 72.4 53 64.2
Eucgr.A01370 Eucalyptus grandis HOM05D004224 ORTHO05D006437 5.7e-11 71.6 78 51.3
arahy.Tifrunner.gnm1.ann1.W9BT88 Arachis hypogaea HOM05D004224 ORTHO05D006437 1.3e-10 70.5 44 79.5
arahy.Tifrunner.gnm1.ann1.ZRI07H Arachis hypogaea HOM05D004224 ORTHO05D006437 3.7e-10 68.9 109 44.0
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 1.8e-09 66.6 98 40.8
arahy.Tifrunner.gnm1.ann1.IR3STA Arachis hypogaea HOM05D015477 ORTHO05D084746 3.1e-09 65.9 52 65.4
arahy.Tifrunner.gnm1.ann1.GGIL4B Arachis hypogaea HOM05D001189 ORTHO05D001027 4.1e-09 65.5 31 96.8
Thecc.01G197400 Theobroma cacao HOM05D004224 ORTHO05D006437 6.9e-09 64.7 52 69.2
arahy.Tifrunner.gnm1.ann1.V1YCRI Arachis hypogaea HOM05D001189 ORTHO05D001027 9.1e-09 64.3 31 96.8
arahy.Tifrunner.gnm1.ann1.M7VRPU Arachis hypogaea HOM05D004224 ORTHO05D006437 3.4e-08 62.4 60 56.7
Psat4g228800 Pisum sativum HOM05D001189 ORTHO05D001027 7.7e-08 61.2 31 87.1
QL11p029125 Quercus lobata HOM05D001189 ORTHO05D001027 6.5e-07 58.2 31 80.6
Haze_10316 Corylus avellana HOM05D001189 ORTHO05D001027 3.2e-06 55.8 31 74.2
Cfa004711 Carpinus fangiana HOM05D001189 ORTHO05D001027 4.2e-06 55.5 31 74.2
Zm00001eb058200 Zea mays HOM05D004224 ORTHO05D006437 5.5e-06 55.1 44 65.9
Ca_11014_v3 Cicer arietinum L. HOM05D001189 ORTHO05D001027 7.2e-06 54.7 33 75.8
Glyma.10G255000 Glycine max HOM05D001189 ORTHO05D001027 7.2e-06 54.7 33 78.8
Medtr1g105930 Medicago truncatula HOM05D001189 ORTHO05D001027 7.2e-06 54.7 33 75.8
TPR.G21126 Trifolium pratense HOM05D001189 ORTHO05D001027 7.2e-06 54.7 33 75.8
CiPaw.05G021400 Carya illinoinensis HOM05D001189 ORTHO05D001027 9.4e-06 54.3 31 74.2


User provided reference genes

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