Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.5e-109 399.4 194 100.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.8e-105 386.0 194 97.9
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 5.2e-49 198.4 178 59.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.2e-48 197.2 178 57.3
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 2.6e-48 196.1 179 59.2
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 4.9e-47 191.8 159 60.4
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 3.2e-46 189.1 171 58.5
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 4.1e-46 188.7 152 61.8
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.2e-45 187.2 159 61.0
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 2.7e-45 186.0 178 54.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 4.7e-42 175.3 171 52.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 4.0e-41 172.2 180 52.8
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 6.8e-41 171.4 162 57.4
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 1.5e-40 170.2 178 51.7
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 7.5e-40 167.9 178 51.1
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 3.2e-38 162.5 170 50.6
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 3.2e-38 162.5 213 46.0
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 7.0e-38 161.4 167 52.7
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 7.0e-38 161.4 167 48.5
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 2.0e-37 159.8 175 48.6
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 7.8e-37 157.9 186 46.2
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.0e-36 157.5 168 48.2
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.7e-36 156.8 189 46.0
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 2.3e-36 156.4 175 50.3
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.3e-36 156.4 177 47.5
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.3e-36 156.4 180 48.9
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 3.3e-35 152.5 157 50.3
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.3e-35 152.1 142 53.5
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 7.3e-35 151.4 159 49.7
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 2.8e-34 149.4 187 46.0
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 4.7e-34 148.7 166 47.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.1e-33 147.5 159 48.4
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.4e-33 147.1 162 46.9
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.8e-33 146.7 163 50.9
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.3e-33 146.4 186 44.1
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.1e-33 146.0 164 47.0
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 3.1e-33 146.0 177 42.9
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 3.1e-33 146.0 164 45.1
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 4.0e-33 145.6 178 44.9
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 5.2e-33 145.2 181 42.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.8e-33 144.8 185 43.8
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.2e-32 144.1 198 45.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 1.5e-32 143.7 149 51.0
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.5e-32 143.7 177 42.9
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.5e-32 143.7 177 42.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.0e-32 143.3 184 44.6
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 4.4e-32 142.1 159 49.7
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.4e-32 142.1 155 50.3
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 9.8e-32 141.0 172 44.8
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.7e-31 140.2 183 43.2
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 1.7e-31 140.2 146 47.9
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 1.7e-31 140.2 164 43.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 4.9e-31 138.7 180 42.8
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 1.9e-30 136.7 134 50.7
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.4e-30 136.3 147 50.3
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.4e-30 136.3 168 43.5
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.4e-30 135.2 156 44.9
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 5.4e-30 135.2 156 44.9
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 5.4e-30 135.2 173 43.4
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.2e-29 134.0 146 50.0
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 2.7e-29 132.9 169 40.2
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 7.8e-29 131.3 171 44.4
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 7.8e-29 131.3 173 43.4
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.0e-28 131.0 167 44.3
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.0e-28 131.0 193 41.5
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.0e-28 129.4 153 44.4
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.0e-28 129.4 153 44.4
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 3.9e-28 129.0 142 46.5
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.1e-28 128.6 167 40.7
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.1e-28 128.6 152 44.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.6e-28 128.3 166 43.4
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 8.6e-28 127.9 143 44.8
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 8.6e-28 127.9 167 41.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 2.5e-27 126.3 145 46.9
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 5.6e-27 125.2 176 39.8
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 9.5e-27 124.4 171 45.0
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.2e-26 124.0 185 42.7
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.1e-26 123.2 193 38.9
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.8e-26 122.9 170 42.4
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.6e-26 122.5 167 41.9
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 6.2e-26 121.7 172 39.0
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 8.1e-26 121.3 131 46.6
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.4e-25 120.6 138 47.8
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.1e-25 119.4 181 38.7
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 3.1e-25 119.4 148 45.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.1e-25 119.4 163 39.9
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 4.0e-25 119.0 169 43.2
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 4.0e-25 119.0 187 40.1
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.2e-25 118.6 181 39.2
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 5.2e-25 118.6 147 44.2
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 5.2e-25 118.6 163 39.3
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.5e-24 117.1 141 45.4
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 2.6e-24 116.3 181 41.4
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.4e-24 115.9 171 40.9
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.4e-24 115.5 177 40.7
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 4.4e-24 115.5 171 40.9
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.8e-24 115.2 179 37.4
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 7.6e-24 114.8 177 37.9
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.6e-24 114.8 171 40.4
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 9.9e-24 114.4 142 45.8
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-24 114.4 144 44.4
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.3e-23 114.0 146 41.8
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.7e-23 113.6 148 42.6
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.7e-23 113.6 142 45.8
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.7e-23 113.6 145 42.1
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-23 113.2 173 38.2
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.2e-23 113.2 173 38.2
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.2e-23 113.2 140 47.9
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.9e-23 112.8 153 42.5
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 2.9e-23 112.8 142 44.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.9e-23 112.8 180 43.3
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.9e-23 112.8 179 39.1
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-23 112.5 169 41.4
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-23 112.5 173 38.2
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 4.9e-23 112.1 169 40.2
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 4.9e-23 112.1 175 38.9
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 6.4e-23 111.7 142 45.8
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.4e-23 111.7 168 42.9
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 8.4e-23 111.3 142 43.7
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 8.4e-23 111.3 142 43.7
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-22 110.9 152 42.1
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.1e-22 110.9 172 37.8
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.1e-22 110.9 146 43.2
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.1e-22 110.9 142 45.1
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-22 110.5 169 39.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.9e-22 110.2 140 42.9
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 2.4e-22 109.8 140 42.9
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 2.4e-22 109.8 173 37.6
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 2.4e-22 109.8 140 42.9
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 2.4e-22 109.8 151 43.0
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.1e-22 109.0 142 44.4
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-22 108.6 168 40.5
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.4e-22 108.6 171 35.7
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 7.1e-22 108.2 142 43.7
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 7.1e-22 108.2 146 41.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 9.2e-22 107.8 168 40.5
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 9.2e-22 107.8 149 42.3
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-21 107.5 140 42.9
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-21 107.5 140 42.9
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.2e-21 107.5 149 42.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.6e-21 107.1 151 40.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 3.5e-21 105.9 140 43.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 4.6e-21 105.5 140 42.1
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.6e-21 105.5 171 40.4
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 6.0e-21 105.1 179 39.1
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 6.0e-21 105.1 133 42.9
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-20 104.0 143 40.6
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-20 104.0 140 42.1
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.7e-20 103.6 148 38.5
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.7e-20 103.6 169 37.3
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.3e-20 103.2 140 42.1
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.3e-20 103.2 142 40.8
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 6.6e-20 101.7 179 37.4
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.6e-20 101.3 179 38.5
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 8.6e-20 101.3 149 40.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.1e-19 100.9 143 39.9
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-19 100.1 168 35.1
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.9e-19 100.1 168 35.7
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.9e-19 100.1 168 35.1
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.9e-19 100.1 168 35.1
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.5e-19 99.8 168 35.1
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.5e-19 99.8 168 35.1
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.3e-19 99.0 139 41.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.6e-19 98.6 140 40.7
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 9.6e-19 97.8 169 39.1
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.2e-18 97.4 190 35.8
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 3.6e-18 95.9 177 37.3
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.7e-18 95.5 148 37.8
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.0e-17 92.4 138 37.7
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 6.9e-17 91.7 150 36.0
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 8.9e-17 91.3 157 35.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.0e-16 90.1 97 45.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-16 89.4 177 36.2
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 7.6e-16 88.2 124 41.1
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 3.0e-12 76.3 105 41.9
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.1e-11 74.3 105 41.0
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.6e-10 70.5 108 38.0
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-08 64.3 73 43.8
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 2.9e-07 59.7 62 50.0
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.9e-06 57.0 127 32.3
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 4.2e-06 55.8 112 30.4


User provided reference genes

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