Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.4e-190 670.2 589 100.0
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.0e-119 434.9 514 91.1
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 9.2e-73 278.9 532 65.0
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 6.2e-69 266.2 509 73.3
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.3e-68 264.2 511 70.3
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 3.1e-68 263.8 511 70.6
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 3.7e-66 256.9 509 67.4
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 7.1e-57 226.1 501 62.1
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 1.3e-55 221.9 191 55.5
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 5.2e-52 209.9 180 57.2
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.1e-48 198.0 177 55.4
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 5.6e-46 189.9 193 51.8
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 2.8e-45 187.6 204 47.5
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 3.6e-45 187.2 208 48.6
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 4.8e-45 186.8 179 54.2
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 2.4e-44 184.5 208 48.1
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 9.0e-44 182.6 178 52.2
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 9.0e-44 182.6 210 44.3
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 3.4e-43 180.6 179 52.0
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 9.9e-43 179.1 179 52.0
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 2.2e-42 177.9 211 45.5
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.4e-41 175.3 209 45.9
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 4.2e-41 173.7 209 45.9
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 4.2e-41 173.7 211 45.0
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.2e-40 172.2 168 52.4
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 6.0e-40 169.9 199 47.2
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 6.0e-40 169.9 499 62.5
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 3.0e-39 167.5 183 48.6
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.9e-38 164.9 214 44.9
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 3.3e-38 164.1 212 45.3
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 5.6e-38 163.3 209 45.5
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 7.3e-38 162.9 212 42.9
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 7.3e-38 162.9 214 42.5
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 2.1e-37 161.4 201 44.8
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 3.6e-37 160.6 190 44.2
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 3.6e-37 160.6 212 41.0
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.4e-36 158.7 214 43.5
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.8e-36 158.3 212 40.6
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 2.0e-35 154.8 190 44.2
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.7e-34 151.8 202 41.6
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 4.9e-34 150.2 204 41.2
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 1.1e-33 149.1 206 40.8
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 1.1e-33 149.1 213 41.8
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 1.9e-33 148.3 206 40.8
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.9e-33 148.3 205 39.5
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.2e-33 147.5 181 45.9
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 3.2e-33 147.5 181 45.9
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 4.2e-33 147.1 142 54.2
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 4.2e-33 147.1 198 40.9
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 7.1e-33 146.4 204 39.7
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 7.1e-33 146.4 204 39.7
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 7.1e-33 146.4 204 39.7
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 9.3e-33 146.0 142 53.5
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 1.6e-32 145.2 205 41.5
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.7e-32 144.4 205 41.0
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 2.7e-32 144.4 204 39.2
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 2.7e-32 144.4 167 42.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 3.5e-32 144.1 201 40.3
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 4.6e-32 143.7 204 39.2
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 6.0e-32 143.3 204 40.2
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 6.0e-32 143.3 204 40.2
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 7.9e-32 142.9 155 49.0
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.0e-31 142.5 205 40.0
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.0e-31 141.0 181 42.5
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.5e-30 137.9 180 41.7
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.3e-29 135.6 142 50.0
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 1.3e-29 135.6 181 42.0
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.6e-29 135.2 145 50.3
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.6e-29 135.2 204 36.8
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 3.7e-29 134.0 204 38.7
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 4.8e-29 133.7 137 49.6
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 4.0e-28 130.6 207 36.7
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 5.3e-28 130.2 179 42.5
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 5.3e-28 130.2 143 49.7
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 5.3e-28 130.2 143 50.3
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 6.9e-28 129.8 159 42.1
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 2.0e-27 128.3 175 41.1
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 4.5e-27 127.1 182 40.7
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 5.8e-27 126.7 117 51.3
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 5.8e-27 126.7 139 47.5
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 7.6e-27 126.3 161 44.7
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.0e-26 125.9 138 49.3
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.3e-26 125.6 162 46.3
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 2.9e-26 124.4 134 46.3
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.5e-25 121.3 182 41.8
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 4.2e-25 120.6 180 38.9
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.2e-25 120.6 179 40.2
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 2.1e-24 118.2 181 40.9
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.5e-24 117.5 173 41.6
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.5e-24 117.5 173 41.6
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 4.6e-24 117.1 160 40.0
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 3.9e-23 114.0 155 40.6
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 5.1e-23 113.6 167 41.3
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 5.1e-23 113.6 183 40.4
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 3.3e-22 110.9 136 38.2
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 9.6e-22 109.4 137 43.1
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 2.8e-21 107.8 164 37.8
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 3.7e-21 107.5 132 40.2
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 3.7e-21 107.5 184 37.0
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 1.8e-20 105.1 177 32.8
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 2.4e-20 104.8 187 36.4
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 4.0e-20 104.0 92 53.3
Ca_14668_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 6.9e-20 103.2 98 54.1
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 2.0e-19 101.7 154 38.3
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 2.6e-19 101.3 197 36.5
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 3.4e-19 100.9 199 34.2
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 5.8e-19 100.1 198 36.4
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 7.6e-19 99.8 163 38.0
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.9e-18 97.8 170 37.1
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 3.8e-18 97.4 178 34.3
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 5.0e-18 97.1 164 37.8
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 8.4e-18 96.3 169 36.1
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.9e-17 95.1 164 39.0
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 5.7e-14 83.6 161 32.9
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.6e-13 82.0 95 45.3
Psat7g154760 Pisum sativum HOM05D006080 ORTHO05D007382 1.4e-12 79.0 65 56.9
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 3.1e-12 77.8 147 34.0
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 5.3e-12 77.0 103 35.0
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 9.4e-09 66.2 75 48.0
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 1.4e-07 62.4 159 27.0
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 3.9e-07 60.8 113 32.7
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 3.9e-07 60.8 159 26.4
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 5.1e-07 60.5 126 30.2
Lalb_Chr09g0320101 Lupinus albus HOM05D007128 ORTHO05D009059 1.5e-06 58.9 153 28.1
Prupe.2G027000 Prunus persica HOM05D005973 ORTHO05D007285 1.5e-06 58.9 126 29.4
CAN.G475.21 Capsicum annuum HOM05D007402 ORTHO05D003673 2.0e-06 58.5 113 31.0
Psat2g189360 Pisum sativum HOM05D007128 ORTHO05D009059 2.0e-06 58.5 155 26.5
CANSAT78G2527 Cannabis sativa HOM05D007128 ORTHO05D009059 2.5e-06 58.2 158 25.3
Manes.14G160600 Manihot esculenta HOM05D007128 ORTHO05D009059 3.3e-06 57.8 160 24.4
Sabra03G0150000 Salix brachista HOM05D005973 ORTHO05D007285 3.3e-06 57.8 134 26.9
SEGI_12554 Sequoiadendron giganteum HOM05D006080 ORTHO05D007382 4.3e-06 57.4 81 39.5
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 5.7e-06 57.0 113 31.0
Potri.003G203100 Populus trichocarpa HOM05D005973 ORTHO05D007285 5.7e-06 57.0 134 26.1
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 7.4e-06 56.6 128 28.9
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 7.4e-06 56.6 126 28.6
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 7.4e-06 56.6 126 27.8
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 9.7e-06 56.2 158 25.9


User provided reference genes

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