Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-36 154.8 78 100.0
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.9e-14 81.6 46 84.8
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-13 79.7 41 97.6
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 7.0e-13 77.0 46 80.4
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 4.6e-12 74.3 40 92.5
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 5.9e-12 73.9 40 90.0
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-11 73.2 42 88.1
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 8.0e-09 63.5 40 80.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.8e-08 62.4 40 77.5
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.1e-08 61.6 40 77.5
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 3.1e-08 61.6 40 77.5
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 5.2e-08 60.8 40 67.5
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 6.8e-08 60.5 40 70.0
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 8.9e-08 60.1 40 72.5
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 8.9e-08 60.1 40 67.5
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.2e-07 59.7 40 65.0
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.2e-07 59.7 40 72.5
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.2e-07 59.7 59 55.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-07 59.3 40 72.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.0e-07 58.9 40 75.0
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.0e-07 58.9 40 70.0
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.6e-07 58.5 59 52.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 3.4e-07 58.2 40 75.0
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 3.4e-07 58.2 40 70.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 4.4e-07 57.8 40 70.0
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 4.4e-07 57.8 40 70.0
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.4e-07 57.8 40 70.0
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.4e-07 57.8 40 70.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 4.4e-07 57.8 40 67.5
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.4e-07 57.8 40 70.0
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.8e-07 57.4 40 67.5
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 5.8e-07 57.4 40 70.0
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.8e-07 57.4 40 70.0
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 5.8e-07 57.4 41 63.4
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 5.8e-07 57.4 40 67.5
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 5.8e-07 57.4 40 67.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 5.8e-07 57.4 56 55.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 9.8e-07 56.6 40 65.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 9.8e-07 56.6 40 75.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.3e-06 56.2 40 72.5
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.3e-06 56.2 40 65.0
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.7e-06 55.8 40 62.5
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.7e-06 55.8 40 67.5
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.7e-06 55.8 41 63.4
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.7e-06 55.8 40 67.5
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.2e-06 55.5 41 61.0
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.2e-06 55.5 40 65.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.2e-06 55.5 40 62.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.2e-06 55.5 40 62.5
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.9e-06 55.1 40 65.0
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.9e-06 55.1 40 65.0
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.7e-06 54.7 40 62.5
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.7e-06 54.7 40 62.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 3.7e-06 54.7 52 57.7
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.7e-06 54.7 40 65.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 3.7e-06 54.7 40 62.5
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 3.7e-06 54.7 40 60.0
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.9e-06 54.3 40 62.5
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 4.9e-06 54.3 40 62.5
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.9e-06 54.3 40 62.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.9e-06 54.3 40 62.5
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 4.9e-06 54.3 41 56.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.9e-06 54.3 40 65.0
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.9e-06 54.3 40 62.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 6.4e-06 53.9 40 62.5
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 6.4e-06 53.9 40 67.5
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.4e-06 53.9 63 49.2
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.4e-06 53.9 40 62.5
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 6.4e-06 53.9 40 65.0
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 6.4e-06 53.9 41 63.4
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 6.4e-06 53.9 40 62.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 8.3e-06 53.5 40 62.5
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 8.3e-06 53.5 40 67.5
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 8.3e-06 53.5 40 65.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 8.3e-06 53.5 40 60.0
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 8.3e-06 53.5 41 58.5


User provided reference genes

Program Settings