Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 9.7e-59 229.9 117 100.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-46 189.9 129 80.6
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.5e-46 188.7 145 72.4
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.5e-46 188.7 145 72.4
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-38 163.3 105 80.0
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 4.2e-38 161.4 103 80.6
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 4.2e-38 161.4 145 60.7
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 5.5e-38 161.0 145 60.0
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.2e-37 159.8 145 60.7
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 4.7e-37 157.9 141 61.7
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 4.7e-37 157.9 145 59.3
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.4e-36 156.4 145 58.6
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 3.0e-36 155.2 145 59.3
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 1.5e-35 152.9 145 58.6
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 3.1e-33 145.2 145 58.6
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 3.5e-32 141.7 145 54.5
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.5e-32 141.4 95 77.9
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.0e-31 140.2 145 52.4
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 5.0e-31 137.9 145 51.7
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.1e-30 136.7 145 51.0
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.5e-30 135.6 140 51.4
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.5e-30 135.6 140 52.1
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 5.6e-30 134.4 112 62.5
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.6e-29 132.9 140 53.6
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.6e-29 132.9 140 52.9
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 4.7e-29 131.3 140 50.7
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 6.1e-29 131.0 145 49.7
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 8.0e-29 130.6 140 50.0
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.8e-28 129.4 137 50.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.3e-28 129.0 145 49.0
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.0e-28 128.6 140 50.7
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.0e-28 128.6 140 50.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 4.0e-28 128.3 145 49.0
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.2e-27 126.7 117 59.0
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.5e-27 126.3 145 49.0
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.6e-27 125.6 140 49.3
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.4e-27 125.2 145 49.7
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 4.4e-27 124.8 140 50.0
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 4.4e-27 124.8 141 51.1
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 4.4e-27 124.8 145 49.0
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 9.8e-27 123.6 145 48.3
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.2e-26 122.5 145 51.0
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.4e-26 120.9 140 48.6
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 8.3e-26 120.6 145 47.6
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.9e-25 119.4 145 49.0
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.2e-25 118.6 146 45.9
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.2e-25 118.6 146 45.9
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.2e-25 118.6 146 45.9
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.1e-25 118.2 140 47.1
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 5.4e-25 117.9 146 47.9
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.2e-24 116.7 146 45.2
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.6e-24 116.3 145 48.3
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 2.7e-24 115.5 144 47.9
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.7e-24 115.5 145 49.7
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 3.5e-24 115.2 145 46.2
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.6e-24 114.8 145 45.5
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.6e-24 114.8 145 45.5
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 6.0e-24 114.4 140 45.0
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 7.8e-24 114.0 145 49.0
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 7.8e-24 114.0 145 49.0
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.0e-23 113.6 145 45.5
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.7e-23 112.8 145 46.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 3.9e-23 111.7 138 47.1
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.9e-23 111.7 138 44.9
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 3.9e-23 111.7 84 71.4
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 5.0e-23 111.3 145 47.6
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 8.6e-23 110.5 145 46.2
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.9e-22 109.4 147 46.3
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.9e-22 109.4 145 46.9
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.9e-22 109.4 145 46.9
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 4.3e-22 108.2 139 42.4
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 5.6e-22 107.8 145 43.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 7.3e-22 107.5 140 46.4
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.2e-21 106.7 141 44.7
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 1.2e-21 106.7 141 48.9
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.2e-21 106.7 140 45.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.6e-21 106.3 138 44.9
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 2.1e-21 105.9 84 65.5
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 3.6e-21 105.1 145 44.8
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.7e-21 104.8 138 43.5
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.7e-21 104.8 138 43.5
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 6.2e-21 104.4 148 46.6
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 8.0e-21 104.0 138 44.9
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.4e-20 103.2 138 41.3
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 1.8e-20 102.8 145 44.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 2.3e-20 102.4 142 45.1
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 3.1e-20 102.1 149 44.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 4.0e-20 101.7 146 44.5
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 5.2e-20 101.3 138 43.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 5.2e-20 101.3 140 45.7
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.2e-19 100.1 140 43.6
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.6e-19 99.0 138 42.0
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.6e-19 99.0 138 42.0
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 3.4e-19 98.6 140 43.6
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 3.4e-19 98.6 145 43.4
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 9.8e-19 97.1 146 42.5
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 1.3e-18 96.7 146 42.5
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.7e-18 96.3 142 42.3
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.9e-18 95.5 145 41.4
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 3.7e-18 95.1 145 41.4
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 4.9e-18 94.7 147 41.5
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 4.9e-18 94.7 147 42.2
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 6.4e-18 94.4 145 41.4
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 6.4e-18 94.4 145 41.4
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 6.4e-18 94.4 145 41.4
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 6.4e-18 94.4 140 40.7
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 8.3e-18 94.0 146 43.2
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 8.3e-18 94.0 146 43.2
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 8.3e-18 94.0 84 57.1
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.1e-17 93.6 139 41.0
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.1e-17 93.6 147 41.5
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.4e-17 93.2 138 42.0
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 1.4e-17 93.2 147 42.2
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.4e-17 93.2 74 62.2
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 1.9e-17 92.8 74 62.2
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 2.4e-17 92.4 142 40.8
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 3.5e-16 88.6 70 60.0
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.1e-15 84.7 137 40.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 6.6e-15 84.3 142 38.0
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.5e-14 82.4 77 58.4
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 3.3e-14 82.0 113 45.1
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.2e-13 80.1 84 52.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 4.7e-13 78.2 84 52.4
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 8.1e-13 77.4 145 39.3
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.1e-12 77.0 188 34.0
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.1e-12 77.0 139 36.7
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.3e-12 75.9 68 60.3
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.9e-10 68.9 140 35.7
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 3.7e-10 68.6 70 58.6
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 3.7e-10 68.6 66 56.1
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 2.4e-09 65.9 142 32.4
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 4.6e-08 61.6 91 39.6
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 6.0e-08 61.2 70 48.6
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 7.8e-08 60.8 131 38.2
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.3e-07 59.3 37 70.3
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.0e-07 58.9 40 60.0
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 3.9e-07 58.5 76 46.1
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.5e-06 56.6 72 50.0
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.5e-06 56.6 71 47.9


User provided reference genes

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