Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 0.0e+00 1105.9 538 100.0
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 0.0e+00 1090.9 538 98.5
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 4.0e-232 808.1 547 72.2
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 8.9e-232 807.0 540 72.6
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.4e-229 799.7 541 73.8
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 1.4e-229 799.7 540 71.9
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 3.1e-229 798.5 543 71.6
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 4.7e-225 784.6 538 70.6
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 2.4e-221 772.3 540 69.4
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.6e-217 759.6 538 69.3
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.7e-182 643.3 538 59.9
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 1.2e-180 637.1 542 58.7
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 4.6e-180 635.2 539 58.6
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.6e-177 626.7 540 57.0
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 2.8e-177 625.9 540 58.1
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 8.1e-177 624.4 538 58.9
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 6.9e-176 621.3 540 56.7
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 2.0e-175 619.8 550 57.8
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 2.0e-175 619.8 539 56.2
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 3.4e-175 619.0 540 57.4
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 4.9e-174 615.1 534 58.4
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.4e-173 613.6 541 56.2
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 1.9e-173 613.2 540 57.6
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 4.6e-172 608.6 537 55.7
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 1.3e-171 607.1 540 57.0
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 1.3e-171 607.1 539 56.8
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 4.3e-170 602.1 541 55.1
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 3.1e-168 595.9 536 55.4
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 5.8e-167 591.7 538 55.9
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.0e-166 590.9 536 55.0
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.5e-165 586.3 534 54.3
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 1.6e-164 583.6 544 55.9
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 2.5e-162 576.2 535 54.2
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 4.3e-162 575.5 535 53.6
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 9.7e-162 574.3 536 53.0
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.6e-161 573.5 537 54.4
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 2.8e-161 572.8 537 54.0
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 8.2e-161 571.2 537 53.6
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.4e-160 570.5 536 53.7
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 3.1e-160 569.3 537 54.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 6.9e-160 568.2 540 53.5
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.2e-159 567.4 536 54.7
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 1.5e-159 567.0 557 53.0
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.0e-159 566.6 537 53.6
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 2.0e-159 566.6 541 52.7
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.0e-159 566.6 636 49.1
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 2.6e-159 566.2 535 52.7
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 3.4e-159 565.8 535 52.9
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 5.9e-159 565.1 537 53.3
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.9e-159 565.1 538 53.5
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 1.3e-158 563.9 538 52.4
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.3e-158 563.9 540 53.9
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 1.7e-158 563.5 534 53.6
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.2e-158 563.1 537 53.1
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 3.8e-158 562.4 583 51.1
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.9e-157 560.1 537 53.8
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 2.5e-157 559.7 541 54.2
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 4.2e-157 558.9 534 52.8
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 4.2e-157 558.9 537 53.3
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 7.2e-157 558.1 543 52.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 7.2e-157 558.1 533 52.5
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.0e-155 554.3 536 51.7
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.8e-155 553.5 501 55.5
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 9.7e-154 547.7 535 52.5
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 8.2e-153 544.7 537 52.7
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.4e-152 543.9 536 52.4
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 9.1e-152 541.2 531 51.4
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 7.7e-151 538.1 534 52.4
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 1.0e-150 537.7 483 57.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 1.0e-150 537.7 757 40.7
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 3.8e-150 535.8 531 51.8
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 6.5e-150 535.0 535 51.6
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 2.5e-149 533.1 533 51.8
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 9.4e-149 531.2 541 50.6
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 1.6e-148 530.4 484 54.3
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 6.1e-148 528.5 534 51.5
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 2.6e-143 513.1 538 50.9
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 6.1e-140 501.9 492 53.5
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 3.0e-139 499.6 529 49.5
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 2.6e-138 496.5 478 54.4
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 2.0e-135 486.9 474 54.0
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 2.2e-134 483.4 478 52.5
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 2.7e-132 476.5 469 54.6
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 5.2e-131 472.2 543 46.2
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.3e-129 467.6 523 49.1
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 8.3e-129 464.9 366 62.3
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.2e-124 451.1 534 46.4
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.7e-124 449.9 546 46.2
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 2.7e-124 449.9 298 72.5
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 4.9e-121 439.1 459 49.2
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 4.4e-114 416.0 535 42.6
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.6e-111 407.5 546 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.1e-104 384.8 542 41.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 1.2e-103 381.3 532 41.5
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 7.1e-96 355.5 356 53.4
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 1.1e-93 348.2 263 63.1
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 9.2e-88 328.6 256 62.1
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 7.8e-79 298.9 542 33.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 9.6e-77 292.0 268 56.7
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 8.4e-73 278.9 267 53.6
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.4e-72 278.1 500 37.2
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.3e-70 270.8 203 60.6
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.5e-69 267.3 314 46.5
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 1.2e-66 258.5 268 50.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.9e-65 253.8 254 53.5
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.8e-62 244.6 444 36.3
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.0e-62 243.8 188 60.6
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 2.8e-60 237.3 270 49.3
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 8.1e-60 235.7 267 47.2
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.5e-42 176.8 201 48.3
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 3.6e-39 167.2 432 30.3
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.8e-38 164.9 126 65.1
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 6.9e-35 152.9 300 34.7
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.4e-30 138.7 122 56.6
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 6.7e-22 109.8 111 50.5
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 4.7e-15 87.0 75 58.7
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 4.0e-14 84.0 99 47.5
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 4.0e-14 84.0 99 47.5
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 4.0e-14 84.0 99 47.5
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 1.2e-13 82.4 349 22.3
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 1.4e-11 75.5 371 21.6
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 1.8e-11 75.1 346 21.7
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 2.0e-10 71.6 344 24.1
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 3.5e-10 70.9 256 27.7
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 5.9e-10 70.1 334 22.5
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 5.9e-10 70.1 324 23.5
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 1.7e-09 68.6 379 21.6
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 2.9e-09 67.8 385 22.9
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 3.8e-09 67.4 330 24.2
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 1.1e-08 65.9 304 24.3
GSVIVG01009002001 Vitis vinifera HOM05D008167 ORTHO05D010296 1.1e-08 65.9 273 25.3
QL12p036142 Quercus lobata HOM05D008167 ORTHO05D010296 1.9e-08 65.1 367 22.3
CiPaw.05G235800 Carya illinoinensis HOM05D008167 ORTHO05D010296 2.5e-08 64.7 334 22.5
Lj4C716T9 Lonicera japonica HOM05D008167 ORTHO05D010296 2.5e-08 64.7 386 22.8
Lj4C719T5 Lonicera japonica HOM05D008167 ORTHO05D010296 5.5e-08 63.5 390 22.1
MBI02_g36661_MAGBIO Magnolia biondii HOM05D008167 ORTHO05D010296 5.5e-08 63.5 397 21.2
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 9.5e-08 62.8 84 40.5
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 1.6e-07 62.0 84 40.5
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 2.1e-07 61.6 354 20.6
Aqoxy6G00583 Aquilegia oxysepala HOM05D008167 ORTHO05D010296 4.7e-07 60.5 334 21.3
Actinidia10306 Actinidia chinensis HOM05D008167 ORTHO05D010296 6.1e-07 60.1 332 22.3
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 6.1e-07 60.1 367 19.6
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 1.8e-06 58.5 324 21.0
TWI56G0729 Tripterygium wilfordii HOM05D008167 ORTHO05D010296 2.3e-06 58.2 369 20.9
Atru.chr13.1254 Acer truncatum HOM05D008167 ORTHO05D010296 4.0e-06 57.4 162 28.4
PSO541G2703 Papaver somniferum HOM05D008167 ORTHO05D010296 5.2e-06 57.0 370 19.5
Medtr8g020400 Medicago truncatula HOM05D008167 ORTHO05D010296 8.8e-06 56.2 318 21.1


User provided reference genes

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