Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.7e-61 239.2 121 100.0
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.8e-60 235.7 121 98.3
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 5.4e-36 154.5 128 65.6
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.9e-33 146.0 128 61.7
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.6e-32 142.9 127 60.6
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.8e-31 139.4 132 60.6
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 5.7e-30 134.4 127 56.7
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 8.3e-29 130.6 103 69.9
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 4.1e-28 128.3 131 57.3
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 4.1e-28 128.3 112 62.5
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 7.0e-28 127.5 85 74.1
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 1.6e-27 126.3 103 69.9
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.4e-23 113.2 62 93.5
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 2.6e-22 109.0 116 55.2
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 5.8e-22 107.8 114 57.9
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 1.7e-21 106.3 107 56.1
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 8.3e-21 104.0 91 60.4
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.1e-20 103.6 111 53.2
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.9e-20 102.8 112 57.1
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 2.4e-20 102.4 110 53.6
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.4e-20 102.4 116 52.6
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 3.2e-20 102.1 116 56.0
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 4.1e-20 101.7 104 57.7
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.1e-20 101.7 110 55.5
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 9.2e-20 100.5 108 54.6
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.6e-19 99.8 112 51.8
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 1.6e-19 99.8 75 66.7
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.7e-19 99.0 112 56.2
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 3.5e-19 98.6 113 50.4
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 7.8e-19 97.4 110 52.7
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 2.3e-18 95.9 112 51.8
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 3.9e-18 95.1 109 54.1
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 8.6e-18 94.0 113 50.4
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 2.5e-17 92.4 108 50.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 3.3e-17 92.0 97 54.6
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.3e-17 91.7 97 55.7
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 9.5e-17 90.5 108 50.9
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.2e-16 90.1 112 47.3
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.6e-16 89.7 75 60.0
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 2.1e-16 89.4 97 54.6
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-16 88.6 89 56.2
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-16 88.6 89 56.2
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 4.7e-16 88.2 112 49.1
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.7e-16 88.2 113 49.6
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 8.1e-16 87.4 68 63.2
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.1e-15 87.0 104 50.0
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.4e-15 86.7 104 50.0
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.8e-15 86.3 105 47.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 2.3e-15 85.9 94 52.1
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.3e-15 85.9 117 47.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 4.0e-15 85.1 101 51.5
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.2e-15 84.7 85 54.1
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 6.8e-15 84.3 59 69.5
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 2.0e-14 82.8 99 51.5
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 4.4e-14 81.6 104 51.9
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 4.4e-14 81.6 114 44.7
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 5.8e-14 81.3 80 57.5
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 5.8e-14 81.3 108 49.1
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 5.8e-14 81.3 82 56.1
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 5.8e-14 81.3 92 50.0
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 9.8e-14 80.5 121 47.1
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 9.8e-14 80.5 119 47.1
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.3e-13 80.1 108 47.2
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.7e-13 79.7 123 43.9
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.7e-13 79.7 107 44.9
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 2.9e-13 79.0 113 46.0
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 2.9e-13 79.0 104 49.0
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 4.9e-13 78.2 73 54.8
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 6.4e-13 77.8 53 66.0
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 8.3e-13 77.4 65 58.5
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.4e-12 76.6 124 45.2
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.4e-12 76.6 123 43.1
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.9e-12 76.3 70 52.9
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 4.1e-12 75.1 55 67.3
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.1e-12 75.1 65 56.9
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 5.4e-12 74.7 96 49.0
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.4e-12 74.7 123 42.3
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 7.1e-12 74.3 69 56.5
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 9.2e-12 73.9 70 51.4
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.6e-11 73.2 64 57.8
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.6e-11 73.2 122 42.6
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 2.1e-11 72.8 97 46.4
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 3.5e-11 72.0 73 57.5
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 3.5e-11 72.0 73 57.5
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 3.5e-11 72.0 73 57.5
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 3.5e-11 72.0 121 42.1
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 7.8e-11 70.9 95 42.1
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 7.8e-11 70.9 103 44.7
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.3e-10 70.1 115 39.1
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.3e-10 70.1 83 51.8
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.7e-10 69.7 54 63.0
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.7e-10 69.7 107 43.0
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 2.3e-10 69.3 100 47.0
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 8.6e-10 67.4 70 50.0
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 8.6e-10 67.4 83 48.2
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 87 49.4
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 87 49.4
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 1.9e-09 66.2 60 51.7
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.9e-09 66.2 87 49.4
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 3.3e-09 65.5 81 53.1
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 4.3e-09 65.1 57 59.6
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 9.5e-09 63.9 109 39.4
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 9.5e-09 63.9 83 47.0
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 2.1e-08 62.8 89 44.9
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 6.2e-08 61.2 61 49.2
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.3e-07 59.3 60 50.0
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.2e-06 57.0 50 58.0
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 4.4e-06 55.1 66 48.5
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 4.4e-06 55.1 67 47.8
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 5.8e-06 54.7 86 44.2


User provided reference genes

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