Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.9e-61 238.0 161 100.0
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.9e-52 209.5 189 82.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 6.3e-32 141.4 135 59.3
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 1.3e-29 133.7 135 53.3
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 2.7e-27 125.9 135 52.6
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 3.6e-27 125.6 128 52.3
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.8e-26 123.2 132 50.0
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 8.8e-26 120.9 132 50.8
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.9e-25 119.8 132 47.7
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 4.3e-25 118.6 132 50.8
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 4.3e-25 118.6 173 54.3
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 4.8e-24 115.2 133 45.9
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.8e-23 113.2 134 46.3
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 4.1e-23 112.1 133 46.6
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 5.3e-23 111.7 133 45.1
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 2.0e-22 109.8 131 45.8
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 4.5e-22 108.6 133 44.4
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.7e-21 106.7 131 42.0
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 5.0e-21 105.1 131 44.3
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 6.5e-21 104.8 58 74.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.5e-21 104.8 135 43.7
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 8.5e-21 104.4 131 45.0
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 1.1e-20 104.0 121 51.2
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.4e-20 103.6 134 42.5
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 1.9e-20 103.2 66 69.7
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.9e-20 103.2 66 69.7
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.9e-20 103.2 135 43.0
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.5e-20 102.8 132 43.9
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.2e-20 102.4 133 43.6
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 3.2e-20 102.4 126 42.9
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 5.5e-20 101.7 58 72.4
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 9.4e-20 100.9 133 43.6
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.2e-19 100.5 134 45.5
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.6e-19 100.1 133 42.9
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-19 99.4 127 42.5
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 3.6e-19 99.0 133 42.1
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 4.7e-19 98.6 132 40.9
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 6.1e-19 98.2 133 42.9
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 6.1e-19 98.2 59 71.2
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 7.9e-19 97.8 57 73.7
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 1.8e-18 96.7 58 72.4
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.3e-18 96.3 130 40.0
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 2.3e-18 96.3 126 39.7
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 2.3e-18 96.3 127 41.7
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 3.0e-18 95.9 133 39.8
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 3.0e-18 95.9 133 39.8
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 5.1e-18 95.1 134 41.0
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 8.8e-18 94.4 58 70.7
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 1.1e-17 94.0 127 44.1
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.1e-17 94.0 57 66.7
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 1.1e-17 94.0 57 66.7
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.1e-17 94.0 132 41.7
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 1.5e-17 93.6 126 39.7
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.5e-17 93.6 59 66.1
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.3e-17 92.4 61 67.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.3e-17 92.4 132 37.9
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 4.4e-17 92.0 127 38.6
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 5.7e-17 91.7 132 40.9
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.3e-16 90.5 134 41.8
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.7e-16 90.1 134 36.6
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.7e-16 90.1 57 66.7
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 2.8e-16 89.4 67 59.7
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 2.8e-16 89.4 127 41.7
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 3.7e-16 89.0 127 41.7
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 3.7e-16 89.0 127 41.7
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.8e-16 88.6 57 66.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 8.2e-16 87.8 126 36.5
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.4e-15 86.3 57 59.6
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 3.1e-15 85.9 61 59.0
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.1e-15 85.9 133 40.6
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 4.1e-15 85.5 57 63.2
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.1e-15 85.5 56 64.3
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 4.1e-15 85.5 58 62.1
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 5.3e-15 85.1 133 36.1
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 5.3e-15 85.1 57 61.4
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 6.9e-15 84.7 56 64.3
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.9e-15 84.7 56 62.5
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 6.9e-15 84.7 135 36.3
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 9.1e-15 84.3 134 38.1
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.5e-14 83.6 59 59.3
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-14 83.6 56 62.5
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 2.0e-14 83.2 58 58.6
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 2.0e-14 83.2 65 52.3
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 2.0e-14 83.2 136 36.0
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.0e-14 83.2 60 60.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 3.4e-14 82.4 134 37.3
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 3.4e-14 82.4 57 59.6
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 4.5e-14 82.0 67 55.2
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 4.5e-14 82.0 52 67.3
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 5.9e-14 81.6 134 37.3
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 5.9e-14 81.6 134 37.3
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 7.7e-14 81.3 65 50.8
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 7.7e-14 81.3 65 50.8
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 7.7e-14 81.3 57 59.6
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 1.0e-13 80.9 58 56.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.0e-13 80.9 56 60.7
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.3e-13 80.5 108 40.7
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 1.7e-13 80.1 134 37.3
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 2.2e-13 79.7 60 55.0
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 2.2e-13 79.7 115 41.7
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.8e-13 79.0 133 36.1
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.8e-13 79.0 59 61.0
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 5.0e-13 78.6 66 53.0
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 6.5e-13 78.2 133 36.1
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 8.5e-13 77.8 55 58.2
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.9e-12 76.6 57 57.9
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 2.5e-12 76.3 59 49.2
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.5e-12 76.3 61 52.5
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.5e-12 76.3 55 58.2
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 4.2e-12 75.5 57 56.1
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.2e-12 75.5 57 57.9
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 5.5e-12 75.1 129 35.7
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 5.5e-12 75.1 57 57.9
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 7.2e-12 74.7 59 59.3
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 7.2e-12 74.7 59 59.3
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 7.2e-12 74.7 56 55.4
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 7.2e-12 74.7 65 44.6
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.4e-12 74.3 56 53.6
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 9.4e-12 74.3 56 53.6
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 9.4e-12 74.3 108 76.9
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.2e-11 73.9 57 54.4
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.2e-11 73.9 57 54.4
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 2.1e-11 73.2 56 53.6
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 2.7e-11 72.8 55 56.4
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.7e-11 72.8 53 56.6
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 3.6e-11 72.4 58 50.0
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 3.6e-11 72.4 58 50.0
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 3.6e-11 72.4 58 51.7
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 3.6e-11 72.4 58 51.7
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 3.6e-11 72.4 57 54.4
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 8.0e-11 71.2 60 53.3
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 8.0e-11 71.2 57 54.4
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.0e-10 70.9 57 52.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.0e-10 70.9 57 52.6
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.0e-10 70.9 57 52.6
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.0e-10 70.9 57 52.6
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.0e-10 70.9 57 54.4
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.0e-10 70.9 116 37.1
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.4e-10 70.5 58 50.0
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 1.4e-10 70.5 58 53.4
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.8e-10 70.1 57 47.4
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 1.8e-10 70.1 56 53.6
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.3e-10 69.7 120 38.3
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.3e-10 69.7 57 50.9
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 3.0e-10 69.3 57 47.4
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 3.0e-10 69.3 109 39.4
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 3.0e-10 69.3 57 50.9
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.0e-10 69.3 62 45.2
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 3.9e-10 68.9 62 46.8
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 3.9e-10 68.9 54 53.7
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 5.2e-10 68.6 57 47.4
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 6.7e-10 68.2 57 47.4
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 6.7e-10 68.2 57 47.4
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 6.7e-10 68.2 57 47.4
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 6.7e-10 68.2 57 47.4
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 6.7e-10 68.2 57 47.4
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 6.7e-10 68.2 57 47.4
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 6.7e-10 68.2 55 52.7
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 6.7e-10 68.2 54 53.7
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 8.8e-10 67.8 57 45.6
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 8.8e-10 67.8 53 50.9
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.5e-09 67.0 57 47.4
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 3.3e-09 65.9 54 50.0
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 7.4e-09 64.7 57 50.9
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 3.7e-08 62.4 111 36.0
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.4e-07 60.5 83 36.1
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.8e-07 60.1 40 65.0
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.4e-07 59.7 59 45.8
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.3e-07 58.5 83 34.9
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.5e-06 55.8 40 60.0


User provided reference genes

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