Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1832.4 936 100.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1748.8 1000 90.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1596.6 963 85.5
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1589.3 963 84.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1560.0 959 83.9
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1554.7 888 88.1
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1552.7 959 83.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1549.6 890 88.5
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1536.5 853 89.4
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1534.6 853 90.3
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1531.5 872 87.5
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 961 81.4
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 890 86.0
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 970 79.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 853 87.9
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1510.7 963 80.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 853 87.2
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 852 88.3
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1505.3 890 85.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 853 87.0
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 890 84.8
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1498.8 860 86.9
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 853 86.6
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 981 79.3
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1497.3 1008 77.2
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 852 87.3
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1496.1 892 85.0
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1494.9 853 87.5
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1494.6 879 85.3
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 853 87.1
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1494.2 889 84.5
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 845 86.7
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 853 87.0
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 845 87.3
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 853 87.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 887 84.8
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 887 84.7
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 853 86.2
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 854 86.2
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 893 83.8
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1480.3 843 87.4
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1479.5 852 86.5
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 848 86.8
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 896 82.7
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 872 84.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1475.7 853 85.5
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 853 86.0
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 865 85.3
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1469.5 848 85.6
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1468.4 882 83.6
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1466.8 853 85.9
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1466.1 848 85.3
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1465.3 853 84.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1464.9 853 85.0
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1464.5 853 84.9
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1462.6 853 84.3
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 848 84.8
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 853 84.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 880 83.3
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1456.4 853 85.3
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1456.0 969 76.1
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 896 81.7
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 848 85.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1454.1 853 85.0
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1453.3 853 84.9
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1449.9 853 83.9
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1446.4 843 84.3
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 863 82.9
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 863 82.9
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 863 82.9
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 853 83.1
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 843 85.1
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 853 82.9
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1440.6 852 83.1
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1438.7 853 83.7
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1437.9 863 82.6
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1433.7 853 83.2
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1431.8 853 84.5
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1431.0 853 82.9
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1429.8 813 87.5
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1429.5 851 83.0
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1427.2 845 84.1
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1426.4 853 82.4
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 853 82.8
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1424.1 851 82.3
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1420.6 872 82.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1420.2 870 80.6
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1418.3 853 81.7
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1417.5 851 82.1
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1416.7 853 81.7
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1416.7 995 74.4
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1415.2 851 81.8
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1413.3 853 81.5
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1411.7 851 81.7
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1410.2 843 81.9
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 853 81.0
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 853 81.0
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1406.3 853 81.0
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1406.0 851 81.0
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1405.6 853 80.9
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1404.8 851 80.7
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1404.8 851 81.4
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1403.3 853 80.9
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1402.5 851 80.7
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1402.1 851 80.7
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1399.0 853 80.8
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1398.3 851 80.5
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1396.3 860 80.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1396.3 875 80.5
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1390.9 857 79.8
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1387.1 840 80.5
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1375.1 877 80.5
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1370.1 845 81.3
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1362.4 853 77.6
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1351.7 893 74.9
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1350.5 823 81.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1346.3 772 86.7
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1342.0 852 77.0
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1335.9 839 79.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1335.1 784 84.2
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1332.4 825 80.8
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1321.6 887 73.6
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1303.1 852 78.1
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1284.2 784 82.9
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1271.5 867 75.0
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1258.0 853 76.2
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1246.1 865 75.7
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1232.6 686 87.8
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1215.7 844 73.7
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1194.5 729 81.1
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1187.2 779 76.6
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1174.1 853 68.2
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1139.0 855 66.9
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 4.5e-308 1061.2 631 83.0
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 9.2e-293 1010.4 863 59.7
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 7.3e-290 1000.7 580 84.8
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 2.4e-269 932.6 571 82.0
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 2.0e-255 886.3 906 53.1
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.2e-213 746.1 496 77.4
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.0e-203 714.5 431 81.7
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.3e-202 709.5 407 85.5
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.7e-191 671.8 442 77.1
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 1.6e-180 637.5 739 49.0
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 2.2e-177 627.1 362 85.1
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 1.6e-164 584.3 459 68.0
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 6.4e-153 545.8 335 80.0
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.3e-142 510.8 295 87.8
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 8.4e-137 492.3 383 67.4
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 5.0e-113 413.3 316 70.9
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.5e-109 401.0 414 54.3
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 2.1e-95 354.8 253 73.5
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 4.5e-90 337.0 232 73.7
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 2.7e-74 284.6 219 72.1
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.2e-68 265.0 211 67.3
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.2e-58 232.6 151 77.5
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.7e-50 204.9 119 81.5
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 6.2e-47 193.7 268 45.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 6.9e-30 137.1 83 80.7
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.2e-29 136.3 81 82.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.4e-29 134.8 90 71.1
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 1.3e-28 132.9 93 66.7
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 4.6e-26 124.4 90 73.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 3.3e-24 118.2 130 53.8
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 7.3e-24 117.1 437 26.5
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 4.8e-23 114.4 65 80.0
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.4e-19 102.1 56 82.1
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 6.0e-18 97.4 60 73.3
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 5.8e-13 80.9 51 78.4
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 7.6e-13 80.5 49 81.6
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-10 73.2 68 61.8
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.0e-09 70.1 43 76.7
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 1.0e-09 70.1 42 81.0
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 8.7e-09 67.0 36 80.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 4.3e-08 64.7 43 69.8
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 1.3e-07 63.2 49 65.3


User provided reference genes

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