Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YJVB5K Arachis hypogaea HOM05D002582 ORTHO05D002781 2.1e-86 322.4 168 100.0
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea HOM05D002582 ORTHO05D002781 4.9e-80 301.2 166 95.2
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea HOM05D002582 ORTHO05D002781 6.0e-78 294.3 173 91.3
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 4.6e-62 241.5 173 75.7
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 6.1e-62 241.1 173 75.7
TPR.G40320 Trifolium pratense HOM05D002582 ORTHO05D002781 6.1e-62 241.1 173 77.5
Lj5g0016358 Lotus japonicus HOM05D002582 ORTHO05D002781 2.3e-61 239.2 173 75.7
Medtr1g058390 Medicago truncatula HOM05D002582 ORTHO05D002781 1.9e-60 236.1 173 76.9
VMungo0720G2392 Vigna mungo HOM05D002582 ORTHO05D002781 1.3e-59 233.4 173 72.3
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 2.8e-59 232.3 173 71.1
Lalb_Chr06g0172521 Lupinus albus HOM05D002582 ORTHO05D002781 2.4e-58 229.2 173 69.9
Psat6g080080 Pisum sativum HOM05D002582 ORTHO05D002781 2.6e-57 225.7 173 72.8
Lalb_Chr02g0154741 Lupinus albus HOM05D002582 ORTHO05D002781 3.8e-56 221.9 173 69.4
Glyma.03G198700 Glycine max HOM05D002582 ORTHO05D002781 1.0e-53 213.8 171 69.0
Ca_25956_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 3.0e-53 212.2 173 68.8
TPR.G23364 Trifolium pratense HOM05D002582 ORTHO05D002781 3.9e-53 211.8 173 69.4
Medtr7g105340 Medicago truncatula HOM05D002582 ORTHO05D002781 4.3e-52 208.4 173 68.8
Prupe.7G100800 Prunus persica HOM05D002582 ORTHO05D002781 5.9e-49 198.0 174 63.8
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.3e-48 196.8 174 63.8
MD14G1032100 Malus domestica HOM05D002582 ORTHO05D002781 1.3e-48 196.8 174 62.6
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 5.0e-48 194.9 174 63.2
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 6.5e-48 194.5 173 59.5
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.5e-48 194.5 174 63.2
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 2.5e-47 192.6 174 63.2
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 9.4e-47 190.7 174 63.8
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 9.4e-47 190.7 174 62.1
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 9.4e-47 190.7 174 62.1
Hma1.2p1_2017F.1_g311170 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 9.4e-47 190.7 174 61.5
Actinidia05397 Actinidia chinensis HOM05D002582 ORTHO05D002781 1.2e-46 190.3 175 61.7
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 1.2e-46 190.3 174 61.5
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 1.2e-46 190.3 174 62.6
Potri.006G208300 Populus trichocarpa HOM05D002582 ORTHO05D002781 2.7e-46 189.1 174 61.5
Lj2A144G24 Lonicera japonica HOM05D002582 ORTHO05D002781 3.6e-46 188.7 187 58.8
Sabra16G0077500 Salix brachista HOM05D002582 ORTHO05D002781 4.7e-46 188.3 174 62.6
Atru.chr8.1437 Acer truncatum HOM05D002582 ORTHO05D002781 6.1e-46 188.0 173 60.7
Sabra16G0080300 Salix brachista HOM05D002582 ORTHO05D002781 6.1e-46 188.0 174 62.6
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 1.0e-45 187.2 173 64.7
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 1.0e-45 187.2 173 62.4
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 1.0e-45 187.2 173 62.4
Manes.08G028900 Manihot esculenta HOM05D002582 ORTHO05D002781 1.4e-45 186.8 174 61.5
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 1.8e-45 186.4 174 62.1
HanXRQChr09g0238341 Helianthus annuus HOM05D002582 ORTHO05D002781 2.3e-45 186.0 174 61.5
Psat3g031120 Pisum sativum HOM05D002582 ORTHO05D002781 2.3e-45 186.0 173 63.0
TWI74G1463 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 3.0e-45 185.7 174 59.8
PGR004G1279 Punica granatum HOM05D002582 ORTHO05D002781 3.9e-45 185.3 173 59.5
Sabra06G0160200 Salix brachista HOM05D002582 ORTHO05D002781 3.9e-45 185.3 174 60.9
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 1.5e-44 183.3 173 60.7
Nn6g34803 Nelumbo nucifera HOM05D002582 ORTHO05D002781 2.0e-44 183.0 174 62.1
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 2.0e-44 183.0 214 52.8
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 2.6e-44 182.6 174 61.5
QL07p038072 Quercus lobata HOM05D002582 ORTHO05D002781 3.3e-44 182.2 174 59.8
TWI77G0235 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 3.3e-44 182.2 174 59.2
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 7.4e-44 181.0 173 60.1
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.8e-43 179.1 173 59.0
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 3.7e-43 178.7 178 58.4
Thecc.05G096300 Theobroma cacao HOM05D002582 ORTHO05D002781 1.4e-42 176.8 174 61.5
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 1.8e-42 176.4 173 57.8
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 2.4e-42 176.0 173 58.4
DCAR_007764 Daucus carota HOM05D002582 ORTHO05D002781 3.1e-42 175.6 173 58.4
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 5.3e-42 174.9 173 59.5
PSO339G0972 Papaver somniferum HOM05D002582 ORTHO05D002781 2.0e-41 172.9 176 58.0
CSS0000696 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 4.5e-41 171.8 215 50.2
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 4.5e-41 171.8 173 56.6
ECA233G2523 Erigeron canadensis HOM05D002582 ORTHO05D002781 1.0e-40 170.6 174 56.9
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 1.0e-40 170.6 173 56.1
DCAR_013417 Daucus carota HOM05D002582 ORTHO05D002781 1.3e-40 170.2 173 58.4
Gohir.A04G059752 Gossypium hirsutum HOM05D002582 ORTHO05D002781 1.7e-40 169.9 173 58.4
Gohir.A04G059778 Gossypium hirsutum HOM05D002582 ORTHO05D002781 1.7e-40 169.9 173 58.4
CANSAT64G0891 Cannabis sativa HOM05D002582 ORTHO05D002781 3.8e-40 168.7 174 56.3
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 3.8e-40 168.7 175 56.6
AL3G23110 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 6.5e-40 167.9 175 56.0
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 3.2e-39 165.6 173 55.5
vmacro14777 Vaccinium macrocarpon HOM05D002582 ORTHO05D002781 3.2e-39 165.6 196 52.0
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 4.2e-39 165.2 175 54.9
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 4.2e-39 165.2 175 56.6
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 4.2e-39 165.2 175 56.6
Migut.J00661 Erythranthe guttata HOM05D002582 ORTHO05D002781 4.2e-39 165.2 173 56.1
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 4.2e-39 165.2 175 54.3
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 5.5e-39 164.9 175 56.0
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 9.4e-39 164.1 175 56.0
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 9.4e-39 164.1 175 56.0
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 9.4e-39 164.1 175 56.0
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 9.4e-39 164.1 174 54.6
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 9.4e-39 164.1 174 54.6
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 1.2e-38 163.7 175 53.7
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 1.2e-38 163.7 175 53.7
Oeu017695.2 Olea europaea HOM05D002582 ORTHO05D002781 1.2e-38 163.7 173 56.6
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 1.6e-38 163.3 175 53.7
SGA_v2.0_scaffold13G06691 Striga asiatica HOM05D002582 ORTHO05D002781 1.6e-38 163.3 173 55.5
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 2.1e-38 162.9 174 54.6
Lsat_1_v5_gn_6_35600 Lactuca sativa HOM05D002582 ORTHO05D002781 2.1e-38 162.9 220 48.2
A10p30250 Brassica napus HOM05D002582 ORTHO05D002781 2.7e-38 162.5 175 56.0
BraA10t45063Z Brassica rapa HOM05D002582 ORTHO05D002781 2.7e-38 162.5 175 56.0
Sed0005359 Sechium edule HOM05D002582 ORTHO05D002781 2.7e-38 162.5 174 52.9
Aa31LG11G7180 Aethionema arabicum HOM05D002582 ORTHO05D002781 3.6e-38 162.2 175 56.0
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 6.1e-38 161.4 174 54.6
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 8.0e-38 161.0 174 54.6
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 5.2e-37 158.3 175 52.6
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 5.2e-37 158.3 175 52.6
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 5.2e-37 158.3 175 52.6
BcaC06g32587 Brassica carinata HOM05D002582 ORTHO05D002781 8.8e-37 157.5 173 55.5
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 8.8e-37 157.5 175 54.3
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.1e-36 157.1 174 52.9
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 1.5e-36 156.8 173 52.0
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 2.0e-36 156.4 173 52.0
CARHR086110 Cardamine hirsuta HOM05D002582 ORTHO05D002781 4.4e-36 155.2 175 52.6
Eucgr.A02629 Eucalyptus grandis HOM05D002582 ORTHO05D002781 5.7e-36 154.8 173 50.9
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 1.7e-35 153.3 175 53.7
PSO801G0394 Papaver somniferum HOM05D002582 ORTHO05D002781 2.2e-35 152.9 176 52.8
C09p70660 Brassica napus HOM05D002582 ORTHO05D002781 3.7e-35 152.1 175 54.3
unitig_8.g4208 Utricularia gibba HOM05D002582 ORTHO05D002781 8.2e-35 151.0 173 53.8
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 1.1e-34 150.6 173 53.2
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 1.4e-34 150.2 173 50.3
ATR0081G061 Amborella trichopoda HOM05D002582 ORTHO05D002781 1.8e-34 149.8 175 50.9
HPP92_013132 Vanilla planifolia HOM05D002582 ORTHO05D002781 1.8e-34 149.8 173 50.9
HPP92_013111 Vanilla planifolia HOM05D002582 ORTHO05D002781 1.2e-33 147.1 173 50.3
COL.COLO4_29665 Corchorus olitorius HOM05D002582 ORTHO05D002781 2.0e-33 146.4 107 69.2
CSS0017430 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 3.5e-33 145.6 108 68.5
Cpa.g.sc104.88 Carica papaya HOM05D002582 ORTHO05D002781 7.7e-33 144.4 107 68.2
ECA248G1278 Erigeron canadensis HOM05D002582 ORTHO05D002781 1.0e-32 144.1 174 52.3
CDE12G0162 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 1.3e-32 143.7 173 51.4
MSTRG.19280 Avicennia marina HOM05D002582 ORTHO05D002781 1.6e-30 136.7 173 48.6
BolC9t59822H Brassica oleracea HOM05D002582 ORTHO05D002781 2.7e-30 136.0 190 48.9
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 3.6e-30 135.6 175 49.1
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 1.0e-29 134.0 177 47.5
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 2.3e-29 132.9 173 48.6
Ah.08g210330 Amaranthus hybridus HOM05D002582 ORTHO05D002781 4.0e-29 132.1 259 39.4
Sp6g36660 Schrenkiella parvula HOM05D002582 ORTHO05D002781 6.8e-29 131.3 175 48.6
Os08g0482100 Oryza sativa ssp. japonica HOM05D002582 ORTHO05D002781 1.2e-28 130.6 177 50.3
MSTRG.5869 Avicennia marina HOM05D002582 ORTHO05D002781 5.7e-28 128.3 180 47.8
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 9.8e-28 127.5 175 47.4
Zm00001eb033410 Zea mays HOM05D002582 ORTHO05D002781 9.8e-28 127.5 170 50.0
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 1.3e-27 127.1 175 46.9
Haze_19657 Corylus avellana HOM05D002582 ORTHO05D002781 2.4e-26 122.9 142 53.5
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 1.2e-25 120.6 198 44.9
BcaC06g32329 Brassica carinata HOM05D002582 ORTHO05D002781 1.4e-21 107.1 108 56.5
SEGI_19233 Sequoiadendron giganteum HOM05D002582 ORTHO05D002781 1.0e-16 90.9 100 47.0
Pp3c22_13150 Physcomitrium patens HOM05D002582 ORTHO05D002781 5.4e-10 68.6 109 34.9
Cpa.g.sc104.87 Carica papaya HOM05D002582 ORTHO05D002781 1.6e-09 67.0 41 82.9
Pp3c14_11120 Physcomitrium patens HOM05D002582 ORTHO05D002781 7.8e-09 64.7 218 29.4
SMO364G0473 Selaginella moellendorffii HOM05D002582 ORTHO05D002781 1.7e-08 63.5 152 30.3
Pp3c19_18600 Physcomitrium patens HOM05D002582 ORTHO05D002781 3.3e-07 59.3 212 25.5
arahy.Tifrunner.gnm1.ann1.XRK6MC Arachis hypogaea HOM05D000384 ORTHO05D007626 4.3e-07 58.9 38 81.6
COL.COLO4_29664 Corchorus olitorius HOM05D002582 ORTHO05D002781 7.3e-07 58.2 41 75.6
Sc02g0000470 Simmondsia chinensis HOM05D002582 ORTHO05D002781 8.0e-06 54.7 79 41.8


User provided reference genes

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