Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 5.3e-47 190.7 95 100.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 8.8e-34 146.7 82 89.0
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.1e-31 139.8 78 89.7
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.3e-29 132.9 82 78.0
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.7e-29 132.5 87 72.4
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 6.5e-29 130.6 81 77.8
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 6.5e-29 130.6 81 77.8
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 4.2e-28 127.9 86 72.1
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 4.2e-28 127.9 81 75.3
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 5.5e-28 127.5 80 77.5
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 5.5e-28 127.5 81 76.5
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 5.5e-28 127.5 81 76.5
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.2e-28 127.1 82 75.6
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 7.2e-28 127.1 82 75.6
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 9.4e-28 126.7 82 73.2
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 9.4e-28 126.7 82 73.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 9.4e-28 126.7 82 74.4
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 2.1e-27 125.6 81 75.3
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 2.1e-27 125.6 81 76.5
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.1e-27 125.6 81 76.5
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.1e-27 125.6 82 73.2
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 4.7e-27 124.4 81 76.5
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.7e-27 124.4 81 75.3
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 6.1e-27 124.0 81 74.1
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 6.1e-27 124.0 85 72.9
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 8.0e-27 123.6 81 71.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 8.0e-27 123.6 81 75.3
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 8.0e-27 123.6 81 75.3
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.0e-26 123.2 82 73.2
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.0e-26 123.2 82 73.2
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.0e-26 123.2 81 75.3
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.0e-26 123.2 81 72.8
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.4e-26 122.9 81 72.8
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.4e-26 122.9 82 72.0
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.8e-26 122.5 95 65.3
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.8e-26 122.5 82 72.0
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.3e-26 122.1 82 72.0
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 2.3e-26 122.1 81 70.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 2.3e-26 122.1 81 71.6
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 5.2e-26 120.9 81 71.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 5.2e-26 120.9 81 72.8
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 5.2e-26 120.9 81 70.4
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 6.7e-26 120.6 81 71.6
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.8e-26 120.2 82 72.0
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 8.8e-26 120.2 85 69.4
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 8.8e-26 120.2 81 70.4
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.2e-25 119.8 81 71.6
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.2e-25 119.8 81 70.4
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.2e-25 119.8 81 70.4
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.2e-25 119.8 82 72.0
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.2e-25 119.8 89 67.4
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 2.0e-25 119.0 81 70.4
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 2.6e-25 118.6 81 70.4
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.6e-25 118.6 81 70.4
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.6e-25 118.6 81 70.4
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 2.6e-25 118.6 81 70.4
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 3.3e-25 118.2 81 69.1
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 9.7e-25 116.7 82 68.3
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 9.7e-25 116.7 81 69.1
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.7e-24 115.9 81 67.9
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.7e-24 115.9 81 69.1
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.2e-24 115.5 81 67.9
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.8e-24 115.2 82 67.1
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 3.7e-24 114.8 81 70.4
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.3e-24 114.0 81 66.7
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 6.3e-24 114.0 81 64.2
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 6.3e-24 114.0 81 66.7
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 6.3e-24 114.0 81 66.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 8.2e-24 113.6 81 65.4
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.1e-23 113.2 81 66.7
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.1e-23 113.2 90 62.2
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.1e-23 113.2 81 66.7
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.4e-23 112.8 85 63.5
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.4e-23 112.8 94 59.6
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.4e-23 112.8 79 69.6
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.8e-23 112.5 80 68.8
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 2.4e-23 112.1 81 65.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 3.1e-23 111.7 81 67.9
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 4.1e-23 111.3 81 67.9
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 2.0e-22 109.0 81 65.4
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.0e-22 109.0 81 64.2
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 3.5e-22 108.2 77 70.1
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 4.5e-22 107.8 95 56.8
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.5e-22 107.8 93 60.2
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.5e-22 107.8 81 63.0
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 4.5e-22 107.8 81 63.0
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 4.5e-22 107.8 85 61.2
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 7.7e-22 107.1 82 63.4
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 7.7e-22 107.1 81 63.0
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.0e-21 106.7 81 63.0
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.9e-21 105.1 90 60.0
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 6.5e-21 104.0 95 55.8
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.2e-20 101.7 81 61.7
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.2e-20 101.3 92 53.3
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.6e-19 99.4 70 70.0
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.0e-18 96.7 81 56.8
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.2e-17 93.2 70 64.3
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.7e-16 88.2 59 67.8
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.3e-16 87.0 68 64.7
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.4e-15 86.3 87 52.9
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.5e-12 76.3 49 75.5
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.9e-12 75.9 81 50.6
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 2.8e-11 72.0 54 70.4


User provided reference genes

Program Settings