Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YGZ7WH Arachis hypogaea HOM05D002934 ORTHO05D030838 1.3e-88 329.7 170 100.0
arahy.Tifrunner.gnm1.ann1.TG142F Arachis hypogaea HOM05D002934 ORTHO05D003937 2.5e-23 112.8 55 92.7
arahy.Tifrunner.gnm1.ann1.6MS3W4 Arachis hypogaea HOM05D002934 ORTHO05D003937 4.3e-23 112.1 54 90.7
Os05g0482700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 5.2e-21 105.1 54 83.3
TAR369G0645 Trochodendron aralioides HOM05D002934 ORTHO05D003937 5.2e-21 105.1 64 73.4
Nn5g26748 Nelumbo nucifera HOM05D002934 ORTHO05D003937 6.9e-21 104.8 56 80.4
Medtr7g074570 Medicago truncatula HOM05D002934 ORTHO05D003937 2.6e-20 102.8 54 79.6
Psat1g024760 Pisum sativum HOM05D002934 ORTHO05D003937 3.4e-20 102.4 54 79.6
Hund14946 Selenicereus undatus HOM05D002934 ORTHO05D003937 5.8e-20 101.7 54 77.8
SGA_v2.0_scaffold181G39723 Striga asiatica HOM05D002934 ORTHO05D003937 9.9e-20 100.9 56 76.8
Lj1g0025652 Lotus japonicus HOM05D002934 ORTHO05D003937 1.3e-19 100.5 54 79.6
HPP92_022876 Vanilla planifolia HOM05D002934 ORTHO05D003937 1.3e-19 100.5 54 77.8
Aqoxy4G01987 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.7e-19 100.1 54 75.9
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 2.9e-19 99.4 56 73.2
Aqoxy2G00661 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 2.9e-19 99.4 54 75.9
MD12G1195300 Malus domestica HOM05D002934 ORTHO05D003937 2.9e-19 99.4 54 75.9
ECA247G2872 Erigeron canadensis HOM05D002934 ORTHO05D003937 3.8e-19 99.0 53 79.2
MD04G1180100 Malus domestica HOM05D002934 ORTHO05D003937 3.8e-19 99.0 54 75.9
GSVIVG01029842001 Vitis vinifera HOM05D002934 ORTHO05D003937 3.8e-19 99.0 54 77.8
MBI15_g05581_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 4.9e-19 98.6 54 75.9
HPP92_028104 Vanilla planifolia HOM05D002934 ORTHO05D003937 4.9e-19 98.6 57 75.4
Ca_07804_v3 Cicer arietinum L. HOM05D002934 ORTHO05D003937 6.4e-19 98.2 54 74.1
HanXRQChr15g0464621 Helianthus annuus HOM05D002934 ORTHO05D003937 6.4e-19 98.2 53 79.2
Sc20g0007380 Simmondsia chinensis HOM05D002934 ORTHO05D003937 6.4e-19 98.2 53 77.4
Sc20g0007500 Simmondsia chinensis HOM05D002934 ORTHO05D003937 6.4e-19 98.2 53 77.4
MSTRG.14890 Avicennia marina HOM05D002934 ORTHO05D003937 8.4e-19 97.8 53 77.4
PGR004G0010 Punica granatum HOM05D002934 ORTHO05D003937 8.4e-19 97.8 55 78.2
TPR.G3169 Trifolium pratense HOM05D002934 ORTHO05D003937 8.4e-19 97.8 54 74.1
PGR031G1733 Punica granatum HOM05D002934 ORTHO05D003937 1.1e-18 97.4 54 77.8
Actinidia11471 Actinidia chinensis HOM05D002934 ORTHO05D003937 1.4e-18 97.1 54 75.9
FAN02G1856 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.4e-18 97.1 53 79.2
Oeu051396.1 Olea europaea HOM05D002934 ORTHO05D003937 1.4e-18 97.1 54 75.9
RcHm_v2.0_Chr3g0459381 Rosa chinensis HOM05D002934 ORTHO05D003937 1.4e-18 97.1 53 75.5
SGA_v2.0_scaffold159G37538 Striga asiatica HOM05D002934 ORTHO05D003937 1.4e-18 97.1 53 75.5
Zm00001eb368990 Zea mays HOM05D002934 ORTHO05D003937 1.4e-18 97.1 53 77.4
Actinidia35154 Actinidia chinensis HOM05D002934 ORTHO05D030838 1.9e-18 96.7 57 70.2
Cc05_g00860 Coffea canephora HOM05D002934 ORTHO05D003937 1.9e-18 96.7 53 77.4
FvH4_6g09180 Fragaria vesca HOM05D002934 ORTHO05D003937 1.9e-18 96.7 53 79.2
FAN09G0756 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.9e-18 96.7 53 79.2
FAN14G3266 Fragaria x ananassa HOM05D002934 ORTHO05D003937 1.9e-18 96.7 53 79.2
Lsat_1_v5_gn_9_40081 Lactuca sativa HOM05D002934 ORTHO05D003937 1.9e-18 96.7 53 77.4
QL07p030511 Quercus lobata HOM05D002934 ORTHO05D003937 1.9e-18 96.7 56 78.6
QL07p031542 Quercus lobata HOM05D002934 ORTHO05D003937 1.9e-18 96.7 56 78.6
Actinidia12530 Actinidia chinensis HOM05D002934 ORTHO05D003937 2.4e-18 96.3 54 77.8
Sc02g0000080 Simmondsia chinensis HOM05D002934 ORTHO05D003937 3.2e-18 95.9 53 77.4
unitig_52.g17320 Utricularia gibba HOM05D002934 ORTHO05D003937 3.2e-18 95.9 53 77.4
CSS0038234 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 4.2e-18 95.5 53 77.4
Glyma.09G270500 Glycine max HOM05D002934 ORTHO05D003937 4.2e-18 95.5 54 75.9
HanXRQChr10g0286701 Helianthus annuus HOM05D002934 ORTHO05D003937 4.2e-18 95.5 53 75.5
Prupe.6G300000 Prunus persica HOM05D002934 ORTHO05D003937 4.2e-18 95.5 54 70.4
ClCG04G005090 Citrullus lanatus HOM05D002934 ORTHO05D003937 5.4e-18 95.1 54 74.1
Oeu033549.1 Olea europaea HOM05D002934 ORTHO05D003937 5.4e-18 95.1 53 73.6
Sed0001902 Sechium edule HOM05D002934 ORTHO05D003937 5.4e-18 95.1 54 72.2
MELO3C025275.2 Cucumis melo HOM05D002934 ORTHO05D003937 7.1e-18 94.7 54 72.2
Eucgr.A00868 Eucalyptus grandis HOM05D002934 ORTHO05D003937 7.1e-18 94.7 54 77.8
EL10Ac1g00002 Beta vulgaris HOM05D002934 ORTHO05D003937 9.3e-18 94.4 54 74.1
EL10Ac7g17147 Beta vulgaris HOM05D002934 ORTHO05D003937 9.3e-18 94.4 54 74.1
Cfa016986 Carpinus fangiana HOM05D002934 ORTHO05D003937 9.3e-18 94.4 54 72.2
CsaV3_4G013550 Cucumis sativus L. HOM05D002934 ORTHO05D003937 9.3e-18 94.4 54 70.4
Manes.09G120000 Manihot esculenta HOM05D002934 ORTHO05D003937 9.3e-18 94.4 55 74.5
PSO384G1474 Papaver somniferum HOM05D002934 ORTHO05D003937 9.3e-18 94.4 54 72.2
TWI74G1089 Tripterygium wilfordii HOM05D002934 ORTHO05D003937 9.3e-18 94.4 55 76.4
unitig_62.g23250 Utricularia gibba HOM05D002934 ORTHO05D003937 9.3e-18 94.4 53 73.6
CDE06G0641 Ceratophyllum demersum HOM05D002934 ORTHO05D003937 1.2e-17 94.0 54 72.2
Haze_21221 Corylus avellana HOM05D002934 ORTHO05D003937 1.2e-17 94.0 54 72.2
Migut.H01273 Erythranthe guttata HOM05D002934 ORTHO05D003937 1.2e-17 94.0 55 70.9
Glyma.18G219100 Glycine max HOM05D002934 ORTHO05D003937 1.2e-17 94.0 54 74.1
PSO339G4103 Papaver somniferum HOM05D002934 ORTHO05D003937 1.2e-17 94.0 54 70.4
Actinidia07503 Actinidia chinensis HOM05D002934 ORTHO05D003937 1.6e-17 93.6 54 75.9
Dinv20232 Davidia involucrata HOM05D002934 ORTHO05D003937 1.6e-17 93.6 61 63.9
Lj3g0015503 Lotus japonicus HOM05D002934 ORTHO05D003937 2.1e-17 93.2 48 79.2
Phvul.008G077900 Phaseolus vulgaris HOM05D002934 ORTHO05D003937 2.1e-17 93.2 54 74.1
VMungo1383G2740 Vigna mungo HOM05D002934 ORTHO05D003937 2.1e-17 93.2 54 74.1
HanXRQChr01g0000311 Helianthus annuus HOM05D002934 ORTHO05D003937 2.7e-17 92.8 51 74.5
Lsat_1_v5_gn_8_108400 Lactuca sativa HOM05D002934 ORTHO05D003937 2.7e-17 92.8 53 73.6
Sabra04G0158900 Salix brachista HOM05D002934 ORTHO05D003937 2.7e-17 92.8 54 77.8
Cpa.g.sc9.169 Carica papaya HOM05D002934 ORTHO05D003937 3.5e-17 92.4 54 75.9
Os01g0817700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 3.5e-17 92.4 53 73.6
Zm00001eb149730 Zea mays HOM05D002934 ORTHO05D003937 3.5e-17 92.4 48 79.2
ATR1127G201 Amborella trichopoda HOM05D002934 ORTHO05D003937 4.6e-17 92.0 54 72.2
AUR62006462 Chenopodium quinoa HOM05D002934 ORTHO05D003937 4.6e-17 92.0 54 70.4
AUR62029818 Chenopodium quinoa HOM05D002934 ORTHO05D003937 4.6e-17 92.0 54 70.4
Manes.08G166700 Manihot esculenta HOM05D002934 ORTHO05D003937 4.6e-17 92.0 55 74.5
TAR633G1746 Trochodendron aralioides HOM05D002934 ORTHO05D003937 4.6e-17 92.0 53 73.6
Potri.006G113300 Populus trichocarpa HOM05D002934 ORTHO05D003937 7.8e-17 91.3 54 74.1
C08p13190 Brassica napus HOM05D002934 ORTHO05D003937 1.0e-16 90.9 51 70.6
BolC8t48948H Brassica oleracea HOM05D002934 ORTHO05D003937 1.0e-16 90.9 51 70.6
Oeu003104.3 Olea europaea HOM05D002934 ORTHO05D003937 1.0e-16 90.9 53 71.7
SEGI_06068 Sequoiadendron giganteum HOM05D002934 ORTHO05D003937 1.0e-16 90.9 54 72.2
Duzib151G0059 Durio zibethinus HOM05D002934 ORTHO05D003937 1.7e-16 90.1 52 69.2
ECA248G1862 Erigeron canadensis HOM05D002934 ORTHO05D003937 1.7e-16 90.1 53 73.6
Eucgr.K01314 Eucalyptus grandis HOM05D002934 ORTHO05D003937 1.7e-16 90.1 54 66.7
Potri.016G142900 Populus trichocarpa HOM05D002934 ORTHO05D003937 1.7e-16 90.1 46 80.4
Thecc.04G001100 Theobroma cacao HOM05D002934 ORTHO05D030838 1.7e-16 90.1 55 70.9
CiPaw.10G167100 Carya illinoinensis HOM05D002934 ORTHO05D003937 2.3e-16 89.7 54 72.2
COL.COLO4_15321 Corchorus olitorius HOM05D002934 ORTHO05D003937 2.3e-16 89.7 55 70.9
COL.COLO4_21259 Corchorus olitorius HOM05D002934 ORTHO05D003937 2.3e-16 89.7 55 70.9
HanXRQChr11g0329261 Helianthus annuus HOM05D002934 ORTHO05D003937 2.3e-16 89.7 53 69.8
Lj1C638T10 Lonicera japonica HOM05D002934 ORTHO05D003937 2.3e-16 89.7 54 72.2
Sabra06G0088200 Salix brachista HOM05D002934 ORTHO05D003937 2.3e-16 89.7 46 78.3
vmacro08741 Vaccinium macrocarpon HOM05D002934 ORTHO05D003937 2.3e-16 89.7 53 71.7
Aa31LG1G5200 Aethionema arabicum HOM05D002934 ORTHO05D003937 3.0e-16 89.4 54 70.4
Aa31LG1G5210 Aethionema arabicum HOM05D002934 ORTHO05D003937 3.0e-16 89.4 54 70.4
A08p34340 Brassica napus HOM05D002934 ORTHO05D003937 3.0e-16 89.4 51 68.6
BraA08t35346Z Brassica rapa HOM05D002934 ORTHO05D003937 3.0e-16 89.4 51 68.6
Lalb_Chr13g0290291 Lupinus albus HOM05D002934 ORTHO05D003937 3.0e-16 89.4 51 70.6
Rhsim12G0013400 Rhododendron simsii HOM05D002934 ORTHO05D003937 3.0e-16 89.4 54 70.4
THA.LOC104799818 Tarenaya hassleriana HOM05D002934 ORTHO05D003937 3.0e-16 89.4 56 67.9
AL3G19560 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 3.9e-16 89.0 54 68.5
AT3G08590 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 3.9e-16 89.0 54 68.5
Carub.0003s0772 Capsella rubella HOM05D002934 ORTHO05D003937 5.1e-16 88.6 54 68.5
Duzib212G0650 Durio zibethinus HOM05D002934 ORTHO05D003937 5.1e-16 88.6 55 69.1
Hund20698 Selenicereus undatus HOM05D002934 ORTHO05D003937 5.1e-16 88.6 54 68.5
BcaC05g29595 Brassica carinata HOM05D002934 ORTHO05D003937 6.6e-16 88.2 54 68.5
C05p59270 Brassica napus HOM05D002934 ORTHO05D003937 6.6e-16 88.2 54 68.5
BolC5t34570H Brassica oleracea HOM05D002934 ORTHO05D003937 6.6e-16 88.2 54 68.5
Carub.0001s0912 Capsella rubella HOM05D002934 ORTHO05D003937 6.6e-16 88.2 52 67.3
CARHR082890 Cardamine hirsuta HOM05D002934 ORTHO05D003937 6.6e-16 88.2 54 68.5
DCAR_023040 Daucus carota HOM05D002934 ORTHO05D003937 6.6e-16 88.2 46 82.6
Thhalv10020418m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 6.6e-16 88.2 54 68.5
AL1G20330 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 8.7e-16 87.8 51 68.6
CARHR009750 Cardamine hirsuta HOM05D002934 ORTHO05D003937 8.7e-16 87.8 51 68.6
Thhalv10007256m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 8.7e-16 87.8 51 68.6
AT1G09780 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 1.1e-15 87.4 51 68.6
CSS0023901 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 1.1e-15 87.4 46 78.3
CSS0033821 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 1.1e-15 87.4 46 78.3
Gohir.D10G125400 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.1e-15 87.4 52 69.2
Gorai.011G138400 Gossypium raimondii HOM05D002934 ORTHO05D003937 1.1e-15 87.4 52 69.2
Hma1.2p1_1020F.1_g248460 Hydrangea macrophylla HOM05D002934 ORTHO05D003937 1.1e-15 87.4 52 73.1
Peaxi162Scf00359g01222 Petunia axillaris HOM05D002934 ORTHO05D003937 1.5e-15 87.0 54 66.7
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 1.5e-15 87.0 53 69.8
CAN.G212.1 Capsicum annuum HOM05D002934 ORTHO05D003937 1.9e-15 86.7 54 68.5
Hund10888 Selenicereus undatus HOM05D002934 ORTHO05D003937 1.9e-15 86.7 59 64.4
Solyc07g044840.3 Solanum lycopersicum HOM05D002934 ORTHO05D003937 1.9e-15 86.7 54 68.5
Sopen07g023400 Solanum pennellii HOM05D002934 ORTHO05D003937 1.9e-15 86.7 54 68.5
A05p40190 Brassica napus HOM05D002934 ORTHO05D003937 2.5e-15 86.3 54 66.7
Gohir.A02G092100 Gossypium hirsutum HOM05D002934 ORTHO05D003937 2.5e-15 86.3 56 64.3
Gohir.D02G108700 Gossypium hirsutum HOM05D002934 ORTHO05D003937 2.5e-15 86.3 56 64.3
Gorai.005G125000 Gossypium raimondii HOM05D002934 ORTHO05D003937 2.5e-15 86.3 56 64.3
Nitab4.5_0006644g0030 Nicotiana tabacum HOM05D002934 ORTHO05D003937 2.5e-15 86.3 53 67.9
Nitab4.5_0008321g0010 Nicotiana tabacum HOM05D002934 ORTHO05D003937 2.5e-15 86.3 53 67.9
Sp1g08370 Schrenkiella parvula HOM05D002934 ORTHO05D003937 3.3e-15 85.9 51 66.7
Thecc.04G170500 Theobroma cacao HOM05D002934 ORTHO05D003937 3.3e-15 85.9 52 67.3
Gohir.A02G010300 Gossypium hirsutum HOM05D002934 ORTHO05D003937 5.6e-15 85.1 52 69.2
Gohir.D02G010600 Gossypium hirsutum HOM05D002934 ORTHO05D003937 5.6e-15 85.1 52 69.2
Gorai.005G012900 Gossypium raimondii HOM05D002934 ORTHO05D003937 5.6e-15 85.1 52 69.2
Sp3g07040 Schrenkiella parvula HOM05D002934 ORTHO05D003937 5.6e-15 85.1 54 66.7
PGSC0003DMG400000935 Solanum tuberosum HOM05D002934 ORTHO05D003937 5.6e-15 85.1 54 66.7
Atru.chr8.38 Acer truncatum HOM05D002934 ORTHO05D003937 7.3e-15 84.7 54 72.2
Gohir.A10G141450 Gossypium hirsutum HOM05D002934 ORTHO05D003937 7.3e-15 84.7 52 69.2
Rhsim05G0234700 Rhododendron simsii HOM05D002934 ORTHO05D003937 9.6e-15 84.3 46 78.3
Eucgr.A00869 Eucalyptus grandis HOM05D002934 ORTHO05D003937 6.2e-14 81.6 54 68.5
Zm00001eb015770 Zea mays HOM05D002934 ORTHO05D003937 1.1e-13 80.9 48 66.7
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 1.5e-12 77.0 84 60.7
SMO147G0367 Selaginella moellendorffii HOM05D002934 ORTHO05D003937 2.6e-12 76.3 54 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3737 Anthoceros agrestis HOM05D002934 ORTHO05D003937 5.8e-12 75.1 50 64.0
Ciclev10011402m.g Citrus clementina HOM05D002934 ORTHO05D003937 5.8e-12 75.1 47 63.8
Mapoly0085s0094 Marchantia polymorpha HOM05D002934 ORTHO05D003937 2.2e-11 73.2 48 60.4
Os03g0330200 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 2.9e-11 72.8 48 60.4
Pp3c10_15340 Physcomitrium patens HOM05D002934 ORTHO05D003937 1.4e-10 70.5 49 57.1
CBR_g36655 Chara braunii HOM05D002934 ORTHO05D003937 2.4e-10 69.7 48 54.2
Pp3c25_670 Physcomitrium patens HOM05D002934 ORTHO05D003937 7.1e-10 68.2 49 55.1
arahy.Tifrunner.gnm1.ann1.GCY6AL Arachis hypogaea HOM05D000832 ORTHO05D000982 2.3e-08 63.2 79 53.2
Pp3c17_2760 Physcomitrium patens HOM05D002934 ORTHO05D003937 3.9e-08 62.4 48 50.0
Pp3c17_2761 Physcomitrium patens HOM05D002934 ORTHO05D003937 3.9e-08 62.4 48 50.0
DCAR_013327 Daucus carota HOM05D002934 ORTHO05D003937 2.5e-07 59.7 34 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2425 Anthoceros agrestis HOM05D002934 ORTHO05D003937 1.3e-06 57.4 47 46.8
Mapoly0014s0209 Marchantia polymorpha HOM05D002934 ORTHO05D003937 2.1e-06 56.6 46 50.0


User provided reference genes

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