Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 6.6e-284 980.7 796 100.0
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 2.1e-274 949.1 796 97.4
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 2.9e-247 859.0 656 74.4
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 2.3e-175 620.2 521 93.5
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 1.8e-148 530.8 662 70.5
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 2.1e-144 517.3 795 61.4
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 8.7e-143 511.9 659 68.9
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 2.7e-136 490.3 662 66.9
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.1e-132 478.4 630 69.2
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.2e-128 464.9 663 65.5
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 8.8e-127 458.8 660 65.8
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 9.7e-126 455.3 666 64.6
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 6.3e-125 452.6 655 65.2
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.2e-122 444.1 666 63.7
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 2.9e-122 443.7 660 63.5
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 6.5e-122 442.6 669 48.9
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.5e-121 440.7 666 63.4
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 1.0e-119 435.3 668 62.3
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 3.9e-119 433.3 674 62.6
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 4.8e-117 426.4 662 63.1
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 5.3e-116 422.9 672 51.0
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 7.0e-116 422.5 674 62.2
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 9.1e-116 422.2 658 63.5
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 1.6e-112 411.4 683 61.5
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 6.1e-112 409.5 662 62.1
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 8.0e-112 409.1 632 65.7
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 1.0e-111 408.7 661 62.6
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 1.4e-111 408.3 672 55.7
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.8e-111 407.9 675 50.8
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 1.5e-110 404.8 658 61.6
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 7.4e-110 402.5 661 62.2
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 7.4e-110 402.5 636 61.8
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.3e-109 401.7 668 61.4
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 8.2e-109 399.1 663 61.8
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 8.2e-109 399.1 667 60.7
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.1e-108 398.7 664 61.1
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 1.4e-108 398.3 636 51.3
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 2.4e-108 397.5 634 63.1
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 4.1e-108 396.7 653 62.2
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 5.3e-108 396.4 670 60.6
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 7.0e-108 396.0 633 63.5
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 5.9e-107 392.9 660 60.8
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 1.0e-106 392.1 634 62.8
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 1.0e-106 392.1 667 60.6
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 2.2e-106 391.0 667 60.4
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 2.5e-105 387.5 658 59.4
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 7.2e-105 386.0 667 60.6
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 7.2e-105 386.0 660 49.2
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 6.7e-103 379.4 654 60.2
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 1.5e-102 378.3 659 51.7
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.8e-101 374.0 641 46.0
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.7e-101 373.6 667 58.8
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 8.2e-101 372.5 637 46.9
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.4e-100 371.7 633 61.9
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 4.1e-100 370.2 635 61.6
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.0e-99 367.9 663 58.5
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 2.7e-99 367.5 637 46.0
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 3.5e-99 367.1 676 39.2
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 8.5e-98 362.5 657 58.1
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 1.9e-97 361.3 635 60.9
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.7e-96 357.5 630 60.6
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 1.4e-95 355.1 627 60.6
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 3.0e-95 354.0 636 43.6
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.0e-95 354.0 627 60.6
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 4.0e-95 353.6 573 52.9
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 5.2e-95 353.2 627 60.4
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 8.8e-95 352.4 652 58.6
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 3.1e-92 344.0 666 40.4
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.5e-91 340.5 633 54.3
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 1.3e-90 338.6 658 47.0
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 6.6e-90 336.3 668 57.5
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-89 335.1 494 52.0
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 2.5e-89 334.3 653 47.3
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 7.2e-89 332.8 464 73.9
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.2e-88 332.0 646 58.4
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 4.7e-88 330.1 653 50.1
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 6.8e-87 326.2 630 58.6
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 2.0e-86 324.7 652 49.2
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 2.0e-86 324.7 659 55.5
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 1.1e-84 318.9 630 58.4
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 1.2e-83 315.5 569 59.6
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 5.2e-79 300.1 636 57.4
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.5e-78 298.5 642 56.5
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.7e-77 295.0 658 54.9
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 4.9e-77 293.5 466 70.0
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 1.6e-72 278.5 646 54.0
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 1.8e-71 275.0 635 56.5
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 1.2e-70 272.3 545 43.7
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 1.3e-69 268.9 533 62.9
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 1.3e-69 268.9 564 43.4
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 6.4e-69 266.5 659 52.5
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 3.5e-67 260.8 303 51.8
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 7.8e-67 259.6 202 63.4
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.3e-61 242.3 202 59.9
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 9.2e-60 236.1 254 51.2
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.2e-56 225.7 633 52.4
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 2.9e-53 214.5 515 42.5
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 9.2e-52 209.5 195 53.8
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 2.3e-50 204.9 175 58.3
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 5.6e-49 200.3 629 38.8
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 2.1e-48 198.4 169 60.9
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.6e-48 197.6 172 58.7
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 4.8e-48 197.2 297 43.4
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 5.3e-47 193.7 199 51.8
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 7.3e-41 173.3 198 45.5
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 2.1e-40 171.8 199 45.2
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 4.0e-39 167.5 160 52.5
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 7.6e-38 163.3 169 52.7
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 2.2e-37 161.8 344 74.4
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 3.3e-33 147.9 107 68.2
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 7.4e-33 146.7 107 68.2
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 2.2e-29 135.2 141 56.7
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 3.9e-26 124.4 197 43.7
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 3.9e-26 124.4 197 43.7
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 9.6e-25 119.8 228 38.6
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 1.1e-20 106.3 98 52.0
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 1.8e-18 99.0 163 42.9
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 5.7e-17 94.0 124 46.8
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 2.9e-13 81.6 93 43.0
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 8.5e-13 80.1 46 82.6
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 1.2e-11 76.3 111 43.2
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 1.0e-10 73.2 42 73.8
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 3.9e-10 71.2 39 84.6
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 2.0e-09 68.9 42 73.8
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 4.8e-08 64.3 49 57.1


User provided reference genes

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