Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 2.5e-111 405.6 230 100.0
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 2.9e-107 392.1 230 96.5
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 7.9e-105 384.0 230 93.5
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 3.8e-75 285.4 228 71.5
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 9.4e-74 280.8 239 67.4
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 8.8e-72 274.2 240 66.2
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 1.7e-70 270.0 240 65.8
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 4.8e-70 268.5 228 67.1
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 1.4e-69 266.9 228 67.1
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 1.8e-69 266.5 223 69.1
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 6.6e-67 258.1 228 65.4
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 1.1e-66 257.3 228 66.7
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 4.1e-61 238.8 225 61.3
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 3.5e-60 235.7 225 61.8
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 7.8e-60 234.6 162 74.7
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 2.3e-59 233.0 228 60.1
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 3.9e-59 232.3 228 60.1
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 5.0e-59 231.9 228 59.6
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 5.6e-58 228.4 230 64.8
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 9.5e-58 227.6 229 59.8
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 2.8e-57 226.1 225 58.7
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 2.8e-57 226.1 225 58.2
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 2.8e-57 226.1 226 59.7
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 4.7e-57 225.3 224 61.2
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.0e-56 224.2 230 60.4
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 1.8e-56 223.4 230 59.6
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 1.8e-56 223.4 226 58.8
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 2.3e-56 223.0 227 59.0
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 2.3e-56 223.0 229 57.2
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 4.0e-56 222.2 228 57.9
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 8.9e-56 221.1 230 60.0
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 8.9e-56 221.1 228 56.6
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 5.8e-55 218.4 232 59.5
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 1.3e-54 217.2 228 57.0
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 8.3e-54 214.5 226 58.4
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 8.3e-54 214.5 226 58.0
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 8.3e-54 214.5 219 58.0
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 1.1e-53 214.2 229 55.9
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.4e-53 213.0 228 57.9
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 2.4e-53 213.0 229 55.5
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 4.1e-53 212.2 228 56.6
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 4.1e-53 212.2 228 56.1
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 5.4e-53 211.8 232 56.5
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 5.4e-53 211.8 235 54.0
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 1.2e-52 210.7 228 54.4
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 1.6e-52 210.3 226 55.8
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 2.0e-52 209.9 169 68.6
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 2.0e-52 209.9 228 57.9
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.7e-52 209.5 230 56.1
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.7e-52 209.5 238 55.0
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 3.5e-52 209.1 173 66.5
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 3.5e-52 209.1 234 55.6
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 7.8e-52 208.0 223 56.5
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 1.0e-51 207.6 228 57.5
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.0e-51 207.6 230 55.7
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 1.0e-51 207.6 230 57.4
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 2.3e-51 206.5 223 55.6
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 3.0e-51 206.1 234 53.4
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 3.0e-51 206.1 228 56.6
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 8.6e-51 204.5 229 58.5
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 8.6e-51 204.5 180 65.6
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 5.6e-50 201.8 230 56.5
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 1.2e-49 200.7 181 60.8
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 1.6e-49 200.3 175 64.0
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 2.1e-49 199.9 229 53.3
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 2.8e-49 199.5 165 66.7
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 8.0e-49 198.0 226 54.4
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 8.0e-49 198.0 143 72.0
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 1.1e-48 197.6 229 50.7
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.4e-48 197.2 251 51.8
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 3.1e-48 196.1 226 54.4
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 4.0e-48 195.7 229 52.4
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 5.8e-47 191.8 228 54.4
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 5.8e-47 191.8 230 53.0
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 7.5e-47 191.4 232 52.6
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 2.9e-46 189.5 227 52.0
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 3.7e-46 189.1 229 51.1
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 5.4e-45 185.3 154 64.9
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 7.0e-45 184.9 234 53.0
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 1.2e-44 184.1 228 49.6
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 1.2e-44 184.1 228 49.6
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 1.6e-44 183.7 227 52.4
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 3.5e-44 182.6 227 52.0
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 6.0e-44 181.8 165 60.6
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 1.7e-43 180.3 229 52.0
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 1.7e-43 180.3 229 52.0
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 3.9e-43 179.1 230 53.5
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 5.1e-43 178.7 126 73.8
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.1e-42 177.6 119 75.6
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.9e-42 176.8 229 51.5
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.9e-42 176.8 229 51.5
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 2.5e-42 176.4 174 56.9
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 2.5e-42 176.4 150 63.3
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 5.6e-42 175.3 223 49.3
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 1.6e-41 173.7 212 51.4
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.8e-41 172.9 172 58.7
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 1.8e-40 170.2 218 50.9
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.2e-39 167.5 120 74.2
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 4.1e-37 159.1 109 72.5
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 2.1e-36 156.8 127 64.6
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 8.9e-32 141.4 232 45.7
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 4.9e-30 135.6 89 74.2
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 6.4e-30 135.2 174 51.7
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 8.4e-30 134.8 174 52.3
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 2.4e-29 133.3 86 74.4
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 4.2e-29 132.5 83 80.7
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 5.4e-29 132.1 174 51.7
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.4e-24 116.7 163 49.1
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 9.9e-23 111.3 170 45.3
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 7.1e-21 105.1 219 37.9
arahy.Tifrunner.gnm1.ann1.HX1S54 Arachis hypogaea HOM05D006141 ORTHO05D007670 2.3e-19 100.1 86 72.1
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 2.4e-16 90.1 134 43.3
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.3e-16 89.0 157 39.5
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 1.9e-13 80.5 225 32.9
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 2.1e-12 77.0 46 78.3
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 7.9e-12 75.1 45 82.2
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 7.9e-12 75.1 166 41.6
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 1.1e-10 71.2 46 71.7
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 1.5e-10 70.9 213 30.5
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.5e-10 70.1 46 71.7
Nitab4.5_0008976g0040 Nicotiana tabacum HOM05D006141 ORTHO05D007670 3.7e-09 66.2 132 39.4
Rhsim01G0083000 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.2e-07 61.2 103 43.7
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 2.0e-07 60.5 167 33.5
MCO02G477 Micromonas commoda HOM05D006141 ORTHO05D007670 5.8e-07 58.9 179 32.4
Cre11.g477250 Chlamydomonas reinhardtii HOM05D006141 ORTHO05D007670 6.4e-06 55.5 96 38.5


User provided reference genes

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