Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 2.1e-126 456.1 291 100.0
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 2.8e-107 392.5 291 85.9
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 8.4e-27 125.2 312 41.7
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.7e-25 120.2 346 34.1
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 4.6e-25 119.4 156 51.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.6e-23 112.5 355 34.4
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.6e-22 110.9 330 33.9
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 2.8e-22 110.2 377 31.0
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-21 108.2 195 40.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.4e-21 107.1 190 41.1
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.0e-20 104.0 371 35.6
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 3.4e-20 103.2 279 35.5
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 4.5e-20 102.8 205 39.0
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 2.4e-18 97.1 139 43.2
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 5.4e-18 95.9 386 28.8
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 4.6e-17 92.8 272 33.5
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 7.9e-17 92.0 143 46.9
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 7.9e-17 92.0 143 46.9
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-16 91.3 143 46.9
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 5.1e-16 89.4 149 42.3
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.9e-15 87.4 155 38.7
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 3.3e-15 86.7 381 31.8
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.3e-15 86.3 176 38.6
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 4.3e-15 86.3 292 34.2
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.6e-15 85.9 162 44.4
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 5.6e-15 85.9 163 39.9
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.6e-14 84.3 156 42.9
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.6e-14 84.3 165 40.6
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.7e-14 83.2 175 37.7
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 1.1e-13 81.6 175 38.3
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 1.4e-13 81.3 120 48.3
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-13 80.9 175 34.9
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.4e-13 80.5 160 38.1
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.4e-13 80.5 157 43.3
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.9e-13 79.0 175 34.9
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 6.9e-13 79.0 152 42.1
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-12 78.2 144 39.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.2e-12 78.2 144 39.6
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.5e-12 77.8 172 35.5
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.0e-12 77.4 159 40.3
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.6e-12 77.0 162 34.0
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.6e-12 77.0 162 37.0
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.4e-12 76.6 161 39.8
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.4e-12 76.6 163 42.3
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 3.4e-12 76.6 143 44.1
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 4.5e-12 76.3 166 35.5
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 5.8e-12 75.9 163 42.9
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 7.6e-12 75.5 140 38.6
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 7.6e-12 75.5 144 38.9
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.0e-11 75.1 176 32.4
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.2e-11 73.9 167 34.7
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-11 73.9 167 34.7
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 6.5e-11 72.4 184 35.3
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 8.4e-11 72.0 146 39.0
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.4e-11 72.0 167 34.7
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.1e-10 71.6 171 36.3
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 1.1e-10 71.6 154 38.3
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.4e-10 71.2 164 39.6
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.5e-10 70.5 172 36.6
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 3.2e-10 70.1 137 38.0
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 4.2e-10 69.7 140 37.1
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 5.5e-10 69.3 141 36.9
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 7.1e-10 68.9 166 41.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.6e-09 67.8 153 39.2
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 2.1e-09 67.4 130 36.9
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 2.7e-09 67.0 174 35.1
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 2.7e-09 67.0 309 27.8
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 3.5e-09 66.6 125 41.6
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 3.5e-09 66.6 162 36.4
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.5e-09 66.6 174 35.1
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 3.5e-09 66.6 136 41.2
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 3.5e-09 66.6 282 30.1
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 4.6e-09 66.2 171 34.5
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.6e-09 66.2 189 32.3
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 6.0e-09 65.9 138 37.7
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 7.9e-09 65.5 143 34.3
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.0e-08 65.1 133 37.6
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.0e-08 65.1 154 37.0
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.3e-08 64.7 153 37.3
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 3.9e-08 63.2 169 33.7
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.9e-08 63.2 151 35.1
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 3.9e-08 63.2 108 38.9
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.9e-08 63.2 142 34.5
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.9e-08 63.2 295 33.6
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 3.9e-08 63.2 143 36.4
Glyma.16G021450 Glycine max HOM05D004242 ORTHO05D004349 6.7e-08 62.4 129 39.5
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 8.7e-08 62.0 121 38.0
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 1.1e-07 61.6 137 35.0
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 1.1e-07 61.6 137 35.0
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.1e-07 61.6 169 34.3
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.1e-07 61.6 133 37.6
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.1e-07 61.6 146 37.7
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.1e-07 61.6 134 33.6
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.1e-07 61.6 143 32.9
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 1.5e-07 61.2 142 35.2
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.5e-07 61.2 169 35.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.5e-07 61.2 169 35.5
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.9e-07 60.8 140 34.3
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.9e-07 60.8 169 33.7
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 3.3e-07 60.1 137 35.0
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 3.3e-07 60.1 137 34.3
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 3.3e-07 60.1 135 36.3
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 4.3e-07 59.7 117 36.8
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.3e-07 59.7 133 32.3
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 4.3e-07 59.7 139 31.7
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 5.7e-07 59.3 165 33.3
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.7e-07 59.3 116 37.9
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 5.7e-07 59.3 121 35.5
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 5.7e-07 59.3 112 34.8
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 5.7e-07 59.3 154 38.3
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 7.4e-07 58.9 147 38.1
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.3e-06 58.2 164 30.5
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.3e-06 58.2 142 34.5
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 1.6e-06 57.8 178 34.3
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.1e-06 57.4 171 33.3
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 2.1e-06 57.4 169 32.5
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.1e-06 57.4 129 34.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.1e-06 57.4 155 34.8
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.1e-06 57.4 176 34.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 2.8e-06 57.0 103 39.8
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 2.8e-06 57.0 144 32.6
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 2.8e-06 57.0 118 34.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.8e-06 57.0 108 36.1
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 3.7e-06 56.6 163 32.5
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.7e-06 56.6 134 33.6
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 3.7e-06 56.6 102 41.2
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.8e-06 56.2 156 32.7
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.8e-06 56.2 130 39.2
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 6.2e-06 55.8 184 30.4
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 6.2e-06 55.8 130 39.2
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 6.2e-06 55.8 155 31.6


User provided reference genes

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