Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 1.1e-189 666.4 327 100.0
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 3.3e-173 611.7 327 93.0
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 3.8e-129 465.3 337 68.5
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 7.5e-125 451.1 354 64.7
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 9.8e-125 450.7 346 66.2
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 1.3e-121 440.3 351 62.7
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 8.6e-121 437.6 308 68.5
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 2.1e-103 379.8 304 62.2
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 1.4e-102 377.1 340 55.0
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 2.3e-102 376.3 319 56.7
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 8.9e-102 374.4 333 55.3
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.2e-101 374.0 248 70.6
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 7.5e-101 371.3 322 56.5
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 2.2e-100 369.8 321 56.1
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 4.9e-100 368.6 327 55.7
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.1e-99 367.5 301 57.5
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 2.4e-99 366.3 292 58.2
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 3.2e-99 365.9 306 56.5
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.2e-98 364.0 321 53.9
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 1.2e-98 364.0 344 50.9
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 2.1e-98 363.2 334 52.7
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 2.1e-98 363.2 300 57.3
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 2.1e-98 363.2 297 58.6
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 2.7e-98 362.8 322 54.0
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 2.7e-98 362.8 298 58.7
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 4.6e-98 362.1 319 53.0
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 7.8e-98 361.3 328 54.6
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 1.3e-97 360.5 293 57.7
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 1.7e-97 360.1 326 55.2
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 5.1e-97 358.6 309 55.7
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 4.3e-96 355.5 309 55.0
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 7.3e-96 354.8 295 55.3
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 9.6e-96 354.4 307 55.4
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 1.6e-95 353.6 323 52.6
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 3.6e-95 352.4 303 57.8
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 3.6e-95 352.4 300 53.7
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 6.2e-95 351.7 309 55.0
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 6.2e-95 351.7 298 54.7
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 8.1e-95 351.3 305 53.4
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.1e-94 350.9 307 53.7
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 1.4e-94 350.5 295 54.2
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 1.8e-94 350.1 309 53.7
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 6.8e-94 348.2 325 52.3
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 8.9e-94 347.8 301 54.2
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 1.2e-93 347.4 275 55.6
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 5.8e-93 345.1 320 51.2
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 3.8e-92 342.4 307 52.4
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 3.8e-92 342.4 299 55.5
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 1.4e-91 340.5 291 55.7
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 5.4e-91 338.6 286 54.5
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 7.1e-91 338.2 337 51.0
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 7.1e-91 338.2 319 52.4
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 1.2e-90 337.4 328 49.7
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 2.1e-90 336.7 307 53.1
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 4.6e-90 335.5 303 54.1
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.0e-90 335.1 307 52.1
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 1.3e-89 334.0 323 50.8
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 2.3e-89 333.2 290 54.8
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 3.9e-89 332.4 283 55.1
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.9e-88 330.1 279 55.9
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.5e-88 329.7 292 53.4
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 2.5e-88 329.7 326 48.8
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 5.6e-88 328.6 281 55.9
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 1.3e-87 327.4 249 59.8
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 4.8e-87 325.5 347 49.9
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 8.1e-87 324.7 311 51.8
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 1.8e-86 323.6 298 54.0
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 9.9e-85 317.8 317 50.2
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 9.9e-85 317.8 289 53.6
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 1.7e-84 317.0 469 38.4
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 1.4e-83 313.9 311 49.5
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 3.2e-83 312.8 279 54.1
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 4.2e-83 312.4 279 53.8
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 3.5e-82 309.3 291 49.1
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 8.7e-81 304.7 279 51.6
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 2.1e-79 300.1 235 59.1
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 3.6e-79 299.3 234 58.1
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 3.6e-79 299.3 248 56.5
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 4.0e-78 295.8 237 54.4
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 9.0e-78 294.7 255 55.3
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 2.0e-77 293.5 333 46.2
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.2e-76 290.0 384 40.6
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 2.1e-74 283.5 308 46.4
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 1.9e-72 276.9 280 47.5
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 8.1e-71 271.6 349 43.8
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 1.7e-68 263.8 210 58.1
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.7e-68 263.8 256 50.4
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 7.9e-66 255.0 296 41.6
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 6.2e-63 245.4 214 57.0
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 9.0e-62 241.5 150 74.7
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 7.1e-59 231.9 281 42.0
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 2.0e-53 213.8 308 37.0
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 2.6e-53 213.4 281 40.9
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 5.0e-52 209.1 204 51.5
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 6.5e-52 208.8 199 51.8
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 1.9e-51 207.2 291 40.9
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 1.6e-50 204.1 165 53.9
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 3.9e-49 199.5 271 36.9
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 3.3e-48 196.4 192 50.0
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 7.4e-48 195.3 192 50.0
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 4.8e-47 192.6 145 60.7
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 3.8e-44 183.0 146 57.5
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 4.2e-43 179.5 314 35.4
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 4.4e-40 169.5 126 59.5
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 3.7e-39 166.4 181 49.7
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 7.7e-37 158.7 102 65.7
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 1.8e-33 147.5 114 59.6
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 4.2e-27 126.3 83 63.9
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.6e-26 123.2 133 48.1
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 6.8e-25 119.0 80 61.2
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 8.3e-23 112.1 75 62.7
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 4.4e-16 89.7 336 26.8
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 2.8e-15 87.0 87 47.1
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 8.3e-15 85.5 253 25.7
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 1.8e-14 84.3 216 31.5
Ca_12392_v3 Cicer arietinum L. HOM05D000112 ORTHO05D023238 2.3e-09 67.4 57 61.4
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 5.2e-09 66.2 44 63.6
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 2.0e-08 64.3 43 62.8
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 1.4e-06 58.2 44 52.3


User provided reference genes

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