Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.3e-299 1032.3 539 100.0
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.2e-297 1025.8 539 99.6
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.4e-232 809.7 531 79.8
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 1.5e-231 806.2 531 79.7
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 4.4e-231 804.7 531 79.7
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 9.8e-231 803.5 534 80.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.8e-229 799.3 532 79.1
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.1e-226 790.0 530 77.7
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 5.8e-215 751.1 530 75.1
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 1.0e-211 740.3 530 73.8
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.1e-209 732.6 531 72.9
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.0e-208 728.4 530 71.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.0e-208 728.4 530 71.1
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 6.8e-208 727.6 531 72.5
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 3.4e-207 725.3 536 69.8
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.4e-207 725.3 530 70.6
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.7e-206 723.0 543 69.6
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.5e-204 715.3 534 70.6
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 5.6e-202 708.0 545 67.7
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 6.2e-201 704.5 547 68.6
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 6.2e-201 704.5 530 69.6
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.1e-200 702.2 549 68.9
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 9.0e-200 700.7 530 70.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.5e-199 699.9 517 70.0
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.4e-199 698.7 517 69.6
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.4e-199 698.4 529 69.8
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.7e-198 696.4 517 69.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.2e-198 696.0 535 67.9
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.9e-197 693.0 535 68.8
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 7.1e-197 691.0 516 68.6
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.1e-196 689.5 540 68.1
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.1e-196 689.5 540 68.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.5e-196 688.7 543 67.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.8e-196 687.6 529 68.6
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.9e-194 682.9 545 67.9
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.3e-194 681.8 529 68.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.4e-192 676.0 535 66.0
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.2e-191 673.7 482 71.2
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 1.2e-191 673.7 539 64.4
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.6e-191 672.5 535 67.7
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.8e-190 668.7 530 67.2
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 3.8e-190 668.7 549 65.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.1e-189 667.2 577 63.1
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.4e-189 666.8 543 64.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.9e-189 666.4 532 66.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 3.3e-186 655.6 561 62.6
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.2e-183 647.1 553 62.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.0e-183 646.4 475 69.9
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.8e-183 644.8 478 68.8
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.2e-180 637.1 554 61.2
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 2.3e-179 632.9 516 65.1
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.8e-176 623.2 540 63.1
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.2e-172 610.5 530 62.6
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.1e-172 609.8 484 64.9
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.9e-170 603.2 533 60.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.3e-169 600.5 483 63.8
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.8e-168 596.7 575 57.0
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 6.9e-168 594.7 547 58.3
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 6.9e-168 594.7 441 69.2
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 3.8e-166 589.0 506 62.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 9.4e-165 584.3 532 60.9
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.3e-161 573.9 531 58.8
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 8.2e-161 571.2 478 62.1
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 8.2e-161 571.2 524 58.0
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.0e-159 566.6 546 57.7
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.4e-155 553.9 541 57.1
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.9e-150 536.2 529 56.0
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 2.7e-148 529.6 416 66.8
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.1e-146 524.2 355 76.3
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 4.4e-146 522.3 528 55.5
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.8e-144 516.9 499 56.9
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.0e-142 511.1 478 57.3
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.9e-142 509.6 476 57.4
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 6.1e-140 501.9 406 64.8
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 4.8e-137 492.3 438 60.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.3e-136 488.8 459 55.8
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.1e-133 481.1 573 49.9
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 9.4e-133 478.0 477 52.8
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.3e-126 457.6 400 61.2
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.6e-126 455.3 342 69.0
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 5.7e-122 442.2 351 66.4
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 7.5e-122 441.8 515 50.3
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.6e-92 343.2 349 56.4
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 6.8e-91 339.0 496 43.8
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 7.1e-88 328.9 479 42.8
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 6.2e-76 289.3 201 72.6
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-74 284.6 469 37.7
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 7.6e-74 282.3 415 40.7
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-73 281.2 475 37.5
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.9e-72 277.7 469 37.7
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.1e-71 274.2 487 37.0
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.7e-71 273.9 434 39.4
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.9e-71 272.3 427 40.5
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.3e-70 270.8 430 38.4
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.7e-70 269.2 486 37.2
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 8.7e-70 268.9 454 39.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.1e-69 268.5 502 37.8
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 2.5e-69 267.3 476 36.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 5.6e-69 266.2 470 37.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.6e-68 264.6 461 38.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.6e-68 264.6 297 51.2
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.1e-67 261.9 480 37.3
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.4e-67 261.5 456 37.7
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 5.3e-67 259.6 410 39.8
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.9e-67 259.2 435 40.0
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.0e-67 258.8 409 39.1
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.4e-66 256.9 410 39.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.5e-66 256.5 405 39.3
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-64 251.9 403 40.9
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 5.5e-64 249.6 405 39.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.1e-64 249.2 347 44.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 9.3e-64 248.8 409 39.6
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-63 248.4 405 39.0
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 4.6e-63 246.5 409 37.2
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 6.0e-63 246.1 404 37.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-62 245.0 404 37.4
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.6e-60 238.0 474 35.4
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.1e-59 235.3 464 36.6
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.2e-58 231.9 457 35.4
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 7.6e-58 229.2 410 36.1
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.0e-57 228.8 408 36.5
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-57 228.0 460 35.7
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 1.9e-56 224.6 166 69.3
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 3.2e-56 223.8 355 37.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 1.2e-55 221.9 401 37.7
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 2.1e-55 221.1 408 36.5
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 2.1e-55 221.1 388 35.1
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 2.5e-53 214.2 440 35.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-51 207.2 408 33.6
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 9.0e-51 205.7 404 35.4
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 5.7e-45 186.4 150 62.0
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.2e-42 178.7 421 33.3
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 2.9e-41 174.1 377 32.9
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.1e-39 166.4 360 32.5
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.6e-37 161.0 217 44.7
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 1.7e-36 158.3 92 83.7
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-35 155.2 268 37.7
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-35 154.8 267 37.5
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-33 146.0 108 64.8
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-32 145.6 190 47.4
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.9e-32 144.8 238 37.8
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.7e-30 136.3 262 37.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-26 125.2 190 41.1
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.5e-25 119.8 265 35.8
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 6.5e-25 119.8 140 46.4
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-24 118.6 122 51.6
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 9.4e-24 115.9 195 36.9
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 4.7e-23 113.6 188 36.7
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-22 110.5 154 42.9
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.6e-18 98.6 58 77.6
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.9e-18 96.7 117 41.0
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 7.7e-18 96.3 143 43.4
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.0e-17 95.9 312 29.8
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.0e-17 93.6 363 26.4
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.1e-16 92.4 65 63.1
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 2.7e-15 87.8 387 25.1
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 4.7e-15 87.0 144 39.6
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.1e-15 86.7 122 43.4
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.0e-14 84.3 61 62.3
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 6.8e-14 83.2 59 66.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 8.8e-14 82.8 66 66.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.5e-13 82.0 104 42.3
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 9.8e-13 79.3 235 26.0
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.8e-12 77.8 92 48.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.7e-12 77.4 194 30.4
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.3e-12 76.6 65 58.5
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.3e-12 76.3 93 50.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.4e-11 75.5 135 40.0
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.4e-11 75.5 139 34.5
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 5.4e-11 73.6 118 38.1
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.4e-11 73.6 66 51.5
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 7.0e-11 73.2 82 46.3
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 9.1e-11 72.8 56 60.7
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.6e-10 72.0 61 55.7
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 3.5e-10 70.9 60 53.3
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 1.5e-08 65.5 132 40.2
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-07 62.0 67 52.2
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 1.6e-07 62.0 55 54.5
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-06 57.8 91 41.8
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 5.2e-06 57.0 121 31.4


User provided reference genes

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