Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y8MDWH Arachis hypogaea HOM05D004254 ORTHO05D005184 2.2e-32 141.7 73 100.0
arahy.Tifrunner.gnm1.ann1.PNMJ0W Arachis hypogaea HOM05D004254 ORTHO05D005184 3.7e-16 87.8 51 88.2
Ca_25341_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 4.9e-16 87.4 47 95.7
Ca_25342_v3 Cicer arietinum L. HOM05D004254 ORTHO05D005184 4.9e-16 87.4 47 95.7
TPR.G8645 Trifolium pratense HOM05D004254 ORTHO05D005184 4.9e-16 87.4 47 95.7
Lj2g0021015 Lotus japonicus HOM05D004254 ORTHO05D005184 8.3e-16 86.7 47 91.5
Medtr6g069685 Medicago truncatula HOM05D004254 ORTHO05D005184 1.1e-15 86.3 51 86.3
Lalb_Chr14g0370611 Lupinus albus HOM05D004254 ORTHO05D005184 1.8e-15 85.5 47 91.5
Psat1g030920 Pisum sativum HOM05D004254 ORTHO05D005184 1.8e-15 85.5 47 93.6
Cpa.g.sc3.389 Carica papaya HOM05D004254 ORTHO05D005184 3.2e-15 84.7 47 91.5
CSS0013925 Camellia sinensis var. sinensis HOM05D004254 ORTHO05D005184 5.4e-15 84.0 47 91.5
Phvul.004G150100 Phaseolus vulgaris HOM05D004254 ORTHO05D005184 7.0e-15 83.6 47 89.4
Actinidia12362 Actinidia chinensis HOM05D004254 ORTHO05D005184 1.2e-14 82.8 51 82.4
Sabra15G0032400 Salix brachista HOM05D004254 ORTHO05D005184 1.2e-14 82.8 50 80.0
CiPaw.15G144100 Carya illinoinensis HOM05D004254 ORTHO05D005184 1.6e-14 82.4 47 89.4
Manes.06G005200 Manihot esculenta HOM05D004254 ORTHO05D005184 2.0e-14 82.0 47 87.2
Thecc.03G057600 Theobroma cacao HOM05D004254 ORTHO05D005184 2.0e-14 82.0 47 85.1
arahy.Tifrunner.gnm1.ann1.3FM8Z5 Arachis hypogaea HOM05D004254 ORTHO05D005184 2.7e-14 81.6 48 85.4
Solyc03g118640.3 Solanum lycopersicum HOM05D004254 ORTHO05D005184 2.7e-14 81.6 47 89.4
Sopen03g037600 Solanum pennellii HOM05D004254 ORTHO05D005184 2.7e-14 81.6 47 89.4
MD14G1237000 Malus domestica HOM05D004254 ORTHO05D005184 3.5e-14 81.3 47 87.2
Nn009s41423 Nelumbo nucifera HOM05D004254 ORTHO05D005184 3.5e-14 81.3 47 89.4
Hma1.2p1_0163F.1_g073040 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 4.6e-14 80.9 47 87.2
Hma1.2p1_0163F.1_g073050 Hydrangea macrophylla HOM05D004254 ORTHO05D005184 4.6e-14 80.9 47 87.2
FvH4_5g17450 Fragaria vesca HOM05D004254 ORTHO05D005184 1.0e-13 79.7 47 85.1
FAN13G1575 Fragaria x ananassa HOM05D004254 ORTHO05D005184 1.0e-13 79.7 47 85.1
FAN18G0674 Fragaria x ananassa HOM05D004254 ORTHO05D005184 1.0e-13 79.7 47 85.1
Prupe.5G234300 Prunus persica HOM05D004254 ORTHO05D005184 1.0e-13 79.7 47 85.1
RcHm_v2.0_Chr7g0178241 Rosa chinensis HOM05D004254 ORTHO05D005184 1.0e-13 79.7 47 85.1
VMungo0464G0766 Vigna mungo HOM05D004254 ORTHO05D005184 1.0e-13 79.7 47 85.1
Migut.I00270 Erythranthe guttata HOM05D004254 ORTHO05D005184 1.3e-13 79.3 47 87.2
FAN04G2545 Fragaria x ananassa HOM05D004254 ORTHO05D005184 1.3e-13 79.3 47 85.1
QL10p030449 Quercus lobata HOM05D004254 ORTHO05D005184 1.3e-13 79.3 47 83.0
TAR629G2841 Trochodendron aralioides HOM05D004254 ORTHO05D005184 1.3e-13 79.3 47 85.1
Gohir.D02G121800 Gossypium hirsutum HOM05D004254 ORTHO05D005184 1.7e-13 79.0 47 80.9
Gorai.005G132300 Gossypium raimondii HOM05D004254 ORTHO05D005184 1.7e-13 79.0 47 80.9
Lj5A159T43 Lonicera japonica HOM05D004254 ORTHO05D005184 1.7e-13 79.0 51 80.4
Nitab4.5_0010223g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 1.7e-13 79.0 47 89.4
Potri.015G037000 Populus trichocarpa HOM05D004254 ORTHO05D005184 1.7e-13 79.0 47 80.9
Sabra15G0031800 Salix brachista HOM05D004254 ORTHO05D005184 1.7e-13 79.0 47 80.9
Sabra15G0059400 Salix brachista HOM05D004254 ORTHO05D005184 1.7e-13 79.0 47 80.9
Haze_18876 Corylus avellana HOM05D004254 ORTHO05D005184 2.3e-13 78.6 47 85.1
Nitab4.5_0001264g0010 Nicotiana tabacum HOM05D004254 ORTHO05D005184 2.3e-13 78.6 47 87.2
AL1G30650 Arabidopsis lyrata HOM05D004254 ORTHO05D005184 2.9e-13 78.2 47 85.1
AT1G18270 Arabidopsis thaliana HOM05D004254 ORTHO05D005184 2.9e-13 78.2 47 85.1
CARHR018830 Cardamine hirsuta HOM05D004254 ORTHO05D005184 2.9e-13 78.2 47 85.1
COL.COLO4_06962 Corchorus olitorius HOM05D004254 ORTHO05D005184 2.9e-13 78.2 47 80.9
Glyma.07G103000 Glycine max HOM05D004254 ORTHO05D005184 2.9e-13 78.2 47 83.0
Rhsim08G0126700 Rhododendron simsii HOM05D004254 ORTHO05D005184 2.9e-13 78.2 49 83.7
Sabra15G0033400 Salix brachista HOM05D004254 ORTHO05D005184 3.9e-13 77.8 47 78.7
CAN.G843.50 Capsicum annuum HOM05D004254 ORTHO05D005184 5.0e-13 77.4 47 85.1
SGA_v2.0_scaffold28G11766 Striga asiatica HOM05D004254 ORTHO05D005184 5.0e-13 77.4 47 80.9
GSVIVG01008461001 Vitis vinifera HOM05D004254 ORTHO05D005184 5.0e-13 77.4 47 83.0
MSTRG.11304 Avicennia marina HOM05D004254 ORTHO05D005184 6.6e-13 77.0 47 83.0
Peaxi162Scf00314g00334 Petunia axillaris HOM05D004254 ORTHO05D005184 6.6e-13 77.0 47 85.1
Sabra15G0030800 Salix brachista HOM05D004254 ORTHO05D005184 6.6e-13 77.0 47 78.7
vmacro17775 Vaccinium macrocarpon HOM05D004254 ORTHO05D005184 6.6e-13 77.0 46 87.0
Aa31LG7G2820 Aethionema arabicum HOM05D004254 ORTHO05D005184 8.6e-13 76.6 47 83.0
Carub.0001s1789 Capsella rubella HOM05D004254 ORTHO05D005184 8.6e-13 76.6 47 83.0
ClCG06G014240 Citrullus lanatus HOM05D004254 ORTHO05D005184 8.6e-13 76.6 47 83.0
A06p14290 Brassica napus HOM05D004254 ORTHO05D005184 1.1e-12 76.3 47 83.0
C05p16550 Brassica napus HOM05D004254 ORTHO05D005184 1.1e-12 76.3 47 83.0
BolC5t30352H Brassica oleracea HOM05D004254 ORTHO05D005184 1.1e-12 76.3 47 83.0
BraA06t24558Z Brassica rapa HOM05D004254 ORTHO05D005184 1.1e-12 76.3 47 83.0
Cc04_g06150 Coffea canephora HOM05D004254 ORTHO05D005184 1.1e-12 76.3 47 85.1
Sp1g16240 Schrenkiella parvula HOM05D004254 ORTHO05D005184 1.1e-12 76.3 47 83.0
PGR083G1460 Punica granatum HOM05D004254 ORTHO05D005184 1.5e-12 75.9 47 83.0
TWI81G0051 Tripterygium wilfordii HOM05D004254 ORTHO05D005184 1.5e-12 75.9 47 80.9
HanXRQChr17g0559181 Helianthus annuus HOM05D004254 ORTHO05D005184 1.9e-12 75.5 47 83.0
Lsat_1_v5_gn_8_141761 Lactuca sativa HOM05D004254 ORTHO05D005184 1.9e-12 75.5 47 83.0
DCAR_012097 Daucus carota HOM05D004254 ORTHO05D005184 2.5e-12 75.1 47 80.9
CsaV3_1G004440 Cucumis sativus L. HOM05D004254 ORTHO05D005184 3.3e-12 74.7 47 80.9
Thhalv10006567m.g Eutrema salsugineum HOM05D004254 ORTHO05D005184 3.3e-12 74.7 47 80.9
BcaC05g25721 Brassica carinata HOM05D004254 ORTHO05D005184 5.6e-12 73.9 47 80.9
ECA233G1972 Erigeron canadensis HOM05D004254 ORTHO05D005184 5.6e-12 73.9 47 80.9
Sed0023132 Sechium edule HOM05D004254 ORTHO05D005184 5.6e-12 73.9 47 80.9
CANSAT21G0981 Cannabis sativa HOM05D004254 ORTHO05D005184 9.5e-12 73.2 47 80.9
Pp3c23_11630 Physcomitrium patens HOM05D004254 ORTHO05D005184 1.2e-11 72.8 47 74.5
MELO3C017366.2 Cucumis melo HOM05D004254 ORTHO05D005184 2.1e-11 72.0 47 78.7
SEGI_15506 Sequoiadendron giganteum HOM05D004254 ORTHO05D005184 2.1e-11 72.0 47 76.6
PSO017G0085 Papaver somniferum HOM05D004254 ORTHO05D005184 2.8e-11 71.6 47 80.9
Aqoxy3G00045 Aquilegia oxysepala HOM05D004254 ORTHO05D005184 6.1e-11 70.5 47 78.7
PSO478G1825 Papaver somniferum HOM05D004254 ORTHO05D005184 8.0e-11 70.1 47 78.7
Eucgr.B00991 Eucalyptus grandis HOM05D004254 ORTHO05D005184 1.0e-10 69.7 47 76.6
unitig_749.g14137 Utricularia gibba HOM05D004254 ORTHO05D005184 1.4e-10 69.3 47 72.3
Gohir.A03G092900 Gossypium hirsutum HOM05D004254 ORTHO05D005184 2.3e-10 68.6 43 79.1
Sabra15G0033300 Salix brachista HOM05D004254 ORTHO05D005184 2.3e-10 68.6 43 79.1
Sabra15G0058300 Salix brachista HOM05D004254 ORTHO05D005184 2.3e-10 68.6 43 79.1
AUR62035874 Chenopodium quinoa HOM05D004254 ORTHO05D005184 4.0e-10 67.8 51 68.6
Sc10g0009220 Simmondsia chinensis HOM05D004254 ORTHO05D005184 1.2e-09 66.2 51 68.6
Ah.13g074660 Amaranthus hybridus HOM05D004254 ORTHO05D005184 1.5e-09 65.9 51 66.7
arahy.Tifrunner.gnm1.ann1.QLLT1A Arachis hypogaea HOM05D004254 ORTHO05D005184 2.0e-09 65.5 35 97.1
ATR1102G040 Amborella trichopoda HOM05D004254 ORTHO05D005184 2.6e-09 65.1 47 70.2
Mapoly0094s0055 Marchantia polymorpha HOM05D004254 ORTHO05D005184 2.6e-09 65.1 47 70.2
arahy.Tifrunner.gnm1.ann1.FFN37F Arachis hypogaea HOM05D004254 ORTHO05D005184 4.4e-09 64.3 37 86.5
Os06g0258900 Oryza sativa ssp. japonica HOM05D004254 ORTHO05D005184 4.4e-09 64.3 47 72.3
HPP92_023491 Vanilla planifolia HOM05D004254 ORTHO05D005184 4.4e-09 64.3 47 68.1
CBR_g29818 Chara braunii HOM05D004254 ORTHO05D005184 1.7e-08 62.4 47 63.8
SMO117G0106 Selaginella moellendorffii HOM05D004254 ORTHO05D005184 2.4e-07 58.5 47 59.6
Zm00001eb280650 Zea mays HOM05D004254 ORTHO05D005184 2.4e-07 58.5 47 63.8


User provided reference genes

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