Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-65 253.1 129 100.0
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-60 235.3 119 98.3
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-59 233.0 122 95.9
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 4.1e-58 228.0 129 87.6
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 5.3e-58 227.6 119 96.6
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 9.1e-58 226.9 129 86.8
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 4.5e-57 224.6 129 86.8
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.0e-56 223.4 129 85.3
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.0e-56 223.4 129 86.8
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 1.3e-56 223.0 127 85.8
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 1.7e-56 222.6 127 87.4
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.2e-56 222.2 129 84.5
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 2.9e-56 221.9 129 86.0
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 84.5
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 84.5
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 83.7
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 83.7
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.1e-55 219.9 129 82.9
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 1.1e-55 219.9 129 82.9
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 83.7
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.9e-55 219.2 128 82.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 82.7
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.9e-55 219.2 129 82.9
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 83.7
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 7.2e-55 217.2 124 85.5
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 85.3
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 9.4e-55 216.9 128 82.0
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 85.3
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 84.5
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 1.2e-54 216.5 129 82.9
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.6e-54 216.1 129 82.9
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.1e-54 215.7 129 82.2
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 2.7e-54 215.3 127 81.9
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 82.9
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 82.2
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 3.6e-54 214.9 129 81.4
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 80.6
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 82.2
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 80.6
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 79.8
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 83.7
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 79.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 6.1e-54 214.2 128 80.5
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 6.1e-54 214.2 129 79.8
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 7.9e-54 213.8 130 84.6
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 81.4
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 79.8
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 1.4e-53 213.0 129 79.8
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 81.1
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 83.7
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 81.4
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.3e-53 212.2 119 86.6
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 78.3
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 79.1
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 79.1
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 5.2e-53 211.1 120 86.7
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 8.8e-53 210.3 127 81.1
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 81.4
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 80.6
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 79.1
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 80.6
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 2.0e-52 209.1 127 81.9
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 2.6e-52 208.8 127 81.9
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.6e-52 208.8 119 86.6
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 4.4e-52 208.0 129 81.4
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 5.7e-52 207.6 127 81.9
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 5.7e-52 207.6 127 79.5
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 9.7e-52 206.8 129 82.2
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 1.3e-51 206.5 123 78.9
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.2e-51 205.7 127 81.1
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 79.5
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 107 97.2
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.7e-51 204.9 121 81.0
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 3.7e-51 204.9 119 82.4
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 76.0
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.3e-51 204.1 119 82.4
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 8.2e-51 203.8 105 99.0
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 82.4
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 76.7
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 129 76.7
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 81.5
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 81.5
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 3.1e-50 201.8 119 81.5
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 84.0
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 79.8
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 9.1e-50 200.3 119 79.0
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 80.7
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 79.0
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 79.8
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 2.0e-49 199.1 129 78.3
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 79.0
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 5.9e-49 197.6 129 73.6
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 78.2
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 7.7e-49 197.2 129 72.9
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 1.7e-48 196.1 127 74.0
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.2e-48 195.7 121 79.3
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.2e-48 195.7 121 79.3
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 78.2
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 2.5e-47 192.2 126 78.6
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 3.2e-47 191.8 128 70.3
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 9.4e-47 190.3 146 65.8
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 4.7e-46 188.0 148 66.2
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 73.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 8.0e-46 187.2 127 71.7
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.4e-45 186.4 96 99.0
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 73.1
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 4.0e-45 184.9 109 89.9
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.2e-44 183.3 129 69.0
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.2e-44 183.3 119 74.8
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-44 183.3 95 97.9
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.0e-44 182.6 96 96.9
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 3.3e-44 181.8 119 73.1
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 4.4e-44 181.4 128 72.7
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 5.7e-44 181.0 117 71.8
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.2e-43 177.2 122 68.9
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 9.1e-42 173.7 130 66.9
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.2e-41 173.3 121 69.4
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 4.5e-41 171.4 119 68.1
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.0e-40 170.2 129 68.2
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.3e-40 169.9 107 77.6
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 3.2e-39 165.2 133 66.9
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 2.4e-34 149.1 97 72.2
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 7.0e-34 147.5 129 58.9
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 5.9e-33 144.4 100 72.0
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 2.3e-32 142.5 143 51.7
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 4.2e-31 138.3 113 56.6
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 2.3e-29 132.5 141 50.4
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.5e-28 129.8 85 76.5
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 1.3e-27 126.7 99 58.6
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.8e-27 125.6 92 69.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 3.1e-26 122.1 113 52.2
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.1e-18 95.1 51 96.1
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.7e-08 63.2 39 71.8
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.2e-06 57.0 39 71.8


User provided reference genes

Program Settings