Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 9.2e-93 343.6 178 100.0
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 7.8e-92 340.5 178 98.9
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 8.9e-88 327.0 178 94.9
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 6.6e-83 310.8 178 92.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.2e-79 300.1 174 86.2
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 1.3e-78 296.6 177 83.6
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.2e-78 295.8 173 85.5
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 8.3e-78 293.9 178 83.7
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.1e-77 293.5 178 83.7
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 9.2e-77 290.4 174 83.9
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 4.6e-76 288.1 182 81.3
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 6.0e-76 287.7 171 84.2
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.1e-74 283.5 168 84.5
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 4.7e-73 278.1 185 78.9
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 6.2e-73 277.7 170 84.7
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.4e-64 249.2 173 70.5
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 3.1e-64 248.8 171 73.7
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 9.0e-64 247.3 159 77.4
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.5e-63 246.5 171 72.5
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 2.6e-63 245.7 174 74.1
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 3.4e-63 245.4 168 72.0
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 4.4e-63 245.0 166 74.7
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 4.4e-63 245.0 166 73.5
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 7.6e-63 244.2 172 72.1
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 1.3e-62 243.4 171 72.5
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 2.2e-62 242.7 173 72.3
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 3.8e-62 241.9 163 73.0
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 4.9e-62 241.5 161 75.8
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.9e-62 241.5 145 81.4
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 4.9e-62 241.5 161 75.2
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 6.4e-62 241.1 170 72.9
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 6.4e-62 241.1 172 71.5
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.4e-61 240.0 171 70.8
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 1.4e-61 240.0 159 74.2
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 3.2e-61 238.8 164 71.3
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 3.2e-61 238.8 171 71.3
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 7.1e-61 237.7 167 71.3
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 1.2e-60 236.9 167 70.7
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.2e-60 236.9 167 70.7
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 2.7e-60 235.7 171 70.2
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 2.7e-60 235.7 166 71.7
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.7e-60 235.7 174 69.5
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.7e-60 235.7 159 73.0
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 4.6e-60 235.0 171 69.6
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 4.6e-60 235.0 198 62.6
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 7.8e-60 234.2 167 70.1
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.8e-60 234.2 167 69.5
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 7.8e-60 234.2 171 70.2
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 7.8e-60 234.2 161 72.0
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 1.0e-59 233.8 167 70.1
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 1.0e-59 233.8 168 69.0
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.3e-59 233.4 176 69.9
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 1.7e-59 233.0 160 72.5
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 1.7e-59 233.0 160 72.5
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 2.3e-59 232.6 167 68.3
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 2.3e-59 232.6 171 70.2
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 5.1e-59 231.5 172 69.2
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.1e-59 231.5 172 69.2
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 5.1e-59 231.5 168 69.6
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 5.1e-59 231.5 159 73.0
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 8.7e-59 230.7 156 74.4
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 8.7e-59 230.7 178 66.3
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 1.5e-58 229.9 167 70.1
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.9e-58 229.6 160 70.0
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.9e-58 229.6 167 69.5
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.5e-58 229.2 170 68.2
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 4.3e-58 228.4 170 70.0
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 4.3e-58 228.4 172 67.4
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 4.3e-58 228.4 166 72.9
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 4.3e-58 228.4 168 70.2
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 5.6e-58 228.0 172 68.6
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 7.3e-58 227.6 172 68.6
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 9.6e-58 227.3 172 66.9
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.6e-57 226.5 157 71.3
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.6e-57 226.5 168 68.5
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.6e-57 226.5 156 72.4
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 2.1e-57 226.1 167 68.3
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.1e-57 226.1 154 72.7
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 3.6e-57 225.3 174 68.4
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 6.2e-57 224.6 169 69.2
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.4e-56 223.4 159 71.1
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.4e-56 223.4 156 71.8
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 3.1e-56 222.2 172 65.7
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 3.1e-56 222.2 166 68.1
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 5.3e-56 221.5 156 69.9
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.5e-55 219.9 170 65.3
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 1.5e-55 219.9 158 67.1
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.5e-55 219.9 174 63.8
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 2.0e-55 219.5 155 71.0
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 2.6e-55 219.2 164 69.5
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 2.6e-55 219.2 159 69.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 4.5e-55 218.4 158 67.7
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.7e-54 216.5 163 68.7
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.2e-54 216.1 172 66.3
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.2e-54 216.1 205 59.5
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 2.9e-54 215.7 170 64.7
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 4.9e-54 214.9 158 69.0
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 6.4e-54 214.5 162 67.3
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.1e-53 213.8 170 64.1
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 7.1e-53 211.1 164 65.9
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 9.3e-53 210.7 157 66.2
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.7e-52 209.1 158 67.7
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 1.0e-51 207.2 221 56.1
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 1.3e-51 206.8 158 63.9
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 5.1e-51 204.9 159 62.9
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.7e-51 204.1 161 65.2
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.5e-50 203.4 152 65.8
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.9e-50 203.0 167 62.9
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.5e-50 202.6 166 65.7
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.6e-50 201.4 170 60.6
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 6.2e-49 198.0 166 60.2
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.1e-48 197.2 146 66.4
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 5.3e-48 194.9 152 64.5
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 9.9e-47 190.7 154 62.3
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.8e-46 188.7 171 58.5
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 4.9e-46 188.3 152 60.5
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 6.4e-46 188.0 148 65.5
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.9e-45 186.4 164 60.4
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 2.1e-44 183.0 127 70.9
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 3.5e-44 182.2 120 73.3
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.3e-43 180.3 159 59.1
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.5e-42 176.8 200 51.0
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 1.9e-42 176.4 138 65.9
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 4.3e-42 175.3 172 56.4
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 9.6e-42 174.1 162 58.6
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 1.1e-40 170.6 138 60.1
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.8e-39 164.9 105 73.3
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 6.5e-38 161.4 157 56.1
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.5e-37 159.5 152 55.9
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 8.7e-35 151.0 112 69.6
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.1e-34 150.6 96 85.4
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 2.5e-34 149.4 139 54.7
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 3.3e-34 149.1 162 52.5
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 7.4e-34 147.9 176 50.0
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.2e-33 146.4 103 73.8
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 8.2e-33 144.4 113 66.4
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 8.5e-30 134.4 172 46.5
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 1.1e-29 134.0 98 63.3
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 7.2e-29 131.3 105 66.7
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 9.3e-29 131.0 116 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 3.0e-27 125.9 108 64.8
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.5e-26 122.9 84 70.2
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 2.4e-24 116.3 86 73.3
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.2e-23 114.0 152 43.4
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 5.9e-23 111.7 85 70.6
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 1.1e-21 107.5 135 40.7
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 5.1e-19 98.6 74 68.9
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 4.4e-18 95.5 53 81.1
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 5.7e-18 95.1 60 71.7
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.5e-15 87.0 149 35.6
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-15 86.7 58 72.4
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 2.0e-15 86.7 58 72.4
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 1.0e-14 84.3 200 29.0
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 1.1e-13 80.9 57 73.7
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 4.2e-13 79.0 111 47.7
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 9.4e-13 77.8 151 36.4
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.6e-10 69.7 52 75.0
arahy.Tifrunner.gnm1.ann1.7621NS Arachis hypogaea HOM05D054750 ORTHO05D005573 9.1e-08 61.2 32 93.8
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 1.2e-07 60.8 45 60.0
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 5.9e-07 58.5 47 59.6


User provided reference genes

Program Settings