Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 3.7e-238 827.8 411 100.0
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 1.6e-220 769.2 411 93.9
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 2.8e-169 599.0 416 73.3
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 7.6e-167 590.9 415 72.8
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 3.0e-163 578.9 415 71.6
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 1.1e-157 560.5 410 69.5
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 3.7e-153 545.4 415 68.4
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 3.7e-153 545.4 410 69.0
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 4.8e-153 545.0 400 70.5
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 3.4e-151 538.9 416 67.1
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 2.0e-146 523.1 419 65.4
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 3.8e-142 508.8 380 70.5
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 1.0e-123 447.6 416 56.5
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 9.8e-122 441.0 436 54.4
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 2.8e-121 439.5 418 57.4
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 2.8e-121 439.5 413 57.4
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 8.3e-121 438.0 411 56.7
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.0e-118 428.7 416 56.5
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 1.9e-117 426.8 413 54.5
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.2e-116 424.1 404 55.0
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 2.7e-116 422.9 396 56.1
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 4.7e-116 422.2 390 56.2
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 6.1e-116 421.8 404 55.0
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 1.0e-115 421.0 419 55.1
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 1.8e-115 420.2 408 54.7
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 5.7e-114 415.2 485 48.0
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 7.5e-114 414.8 417 55.4
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 1.3e-113 414.1 431 52.9
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 2.2e-113 413.3 417 52.8
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 3.1e-112 409.5 426 53.3
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 1.7e-110 403.7 442 50.9
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 5.6e-109 398.7 405 54.1
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 7.2e-109 398.3 446 49.8
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 1.2e-108 397.5 419 52.0
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.2e-108 397.5 390 53.8
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 4.9e-105 385.6 421 50.1
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 8.3e-105 384.8 417 49.6
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 8.3e-105 384.8 368 57.1
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 1.4e-104 384.0 396 53.5
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 1.4e-104 384.0 386 53.9
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 1.3e-102 377.5 398 52.3
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 1.7e-102 377.1 402 52.0
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 5.0e-102 375.6 414 50.5
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 8.6e-102 374.8 420 51.2
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.6e-102 374.8 393 52.4
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 4.3e-101 372.5 418 49.3
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 5.6e-101 372.1 409 50.1
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 8.0e-100 368.2 426 50.9
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 1.4e-99 367.5 409 49.9
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 4.0e-99 365.9 359 55.2
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 1.2e-98 364.4 389 50.9
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 4.4e-98 362.5 364 53.6
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 4.4e-98 362.5 419 49.2
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 7.5e-98 361.7 387 50.9
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 9.8e-98 361.3 390 51.0
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.3e-97 360.9 401 50.4
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 2.9e-97 359.8 389 50.6
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 6.4e-97 358.6 385 51.2
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 1.9e-96 357.1 438 47.0
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 2.4e-96 356.7 442 47.1
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 2.0e-95 353.6 384 50.3
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 3.5e-95 352.8 388 50.3
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 4.6e-95 352.4 377 53.1
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 6.0e-95 352.1 386 50.0
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 2.3e-94 350.1 398 50.0
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 6.6e-94 348.6 586 39.1
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 1.5e-93 347.4 382 50.5
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 1.5e-93 347.4 382 50.5
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.9e-93 347.1 402 48.5
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.6e-92 344.0 380 50.3
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 2.8e-92 343.2 436 46.6
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 6.8e-91 338.6 395 49.9
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 2.0e-90 337.0 381 50.4
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 2.0e-90 337.0 381 50.4
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 5.8e-90 335.5 423 48.0
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 2.4e-88 330.1 304 58.9
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 2.1e-87 327.0 290 60.0
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 2.1e-87 327.0 383 48.0
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 3.0e-86 323.2 519 39.9
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.5e-85 320.1 326 54.3
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 4.3e-85 319.3 397 49.1
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 4.0e-83 312.8 451 42.8
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 1.2e-82 311.2 353 49.0
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.5e-82 310.8 399 47.4
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 6.0e-79 298.9 397 45.3
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 2.5e-77 293.5 405 45.7
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 6.2e-76 288.9 386 45.3
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 1.4e-75 287.7 402 43.8
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.8e-75 287.3 420 42.6
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 5.8e-74 282.3 396 42.9
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 4.2e-72 276.2 389 42.9
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 1.8e-59 234.2 293 49.1
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 6.4e-57 225.7 421 38.7
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 7.9e-55 218.8 409 37.4
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 3.0e-54 216.9 392 36.7
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 1.1e-48 198.4 166 65.1
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 1.3e-46 191.4 378 32.8
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 1.1e-45 188.3 405 32.6
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 3.7e-44 183.3 250 44.4
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 4.3e-37 159.8 200 47.0
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 2.5e-32 144.1 320 32.5
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 5.7e-29 132.9 160 45.6
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.3e-22 110.9 135 49.6
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 5.1e-22 109.8 88 64.8
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 2.6e-18 97.4 153 38.6
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 5.9e-18 96.3 250 27.2
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 1.2e-15 88.6 99 49.5
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 3.6e-15 87.0 175 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 1.8e-14 84.7 183 32.8
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 6.7e-14 82.8 237 29.5
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 9.1e-11 72.4 185 27.6
Os05g0143200 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 5.0e-09 66.6 104 40.4
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 6.5e-09 66.2 242 27.3
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 1.9e-08 64.7 168 30.4
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 2.1e-07 61.2 237 24.1
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 4.7e-07 60.1 229 25.8
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 1.0e-06 58.9 214 28.0
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 1.0e-06 58.9 163 29.4
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 1.4e-06 58.5 164 28.7
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 1.4e-06 58.5 164 28.0
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 1.4e-06 58.5 167 28.7
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 1.8e-06 58.2 185 27.0
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 1.8e-06 58.2 161 28.6
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 2.3e-06 57.8 163 27.0
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 2.3e-06 57.8 159 28.9
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 2.3e-06 57.8 179 27.4
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 2.3e-06 57.8 168 25.6
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 3.0e-06 57.4 168 25.6
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 3.0e-06 57.4 168 25.6
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 3.0e-06 57.4 168 25.6
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 3.0e-06 57.4 208 25.5
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 3.0e-06 57.4 168 28.6
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 3.0e-06 57.4 161 28.6
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 5.2e-06 56.6 164 30.5
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 6.8e-06 56.2 164 30.5
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 6.8e-06 56.2 170 27.6
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 6.8e-06 56.2 170 27.1
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 6.8e-06 56.2 164 27.4
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 8.8e-06 55.8 162 27.8
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 8.8e-06 55.8 164 30.5
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 8.8e-06 55.8 161 28.6
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 8.8e-06 55.8 170 27.1


User provided reference genes

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