Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 6.5e-214 747.3 417 100.0
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 1.6e-156 556.6 452 73.9
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 2.5e-149 532.7 449 71.5
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 2.5e-149 532.7 452 69.9
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 1.4e-147 526.9 452 70.4
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 6.6e-142 508.1 432 72.5
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 1.4e-139 500.4 441 70.1
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 1.2e-132 477.2 457 65.6
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 1.4e-131 473.8 460 64.8
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 6.8e-131 471.5 341 84.8
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 2.0e-130 469.9 459 62.7
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.2e-127 460.7 460 64.1
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 1.2e-127 460.7 468 62.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 4.6e-127 458.8 448 65.4
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 1.3e-126 457.2 328 81.4
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 3.0e-126 456.1 331 80.4
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.1e-125 454.1 389 71.5
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.3e-125 452.6 455 62.9
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 4.3e-125 452.2 460 61.5
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 7.3e-125 451.4 457 63.7
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.6e-124 450.3 330 81.2
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 4.7e-124 448.7 312 83.7
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.1e-123 447.6 459 62.5
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.8e-123 446.8 462 63.4
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-123 445.7 459 61.9
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-123 445.7 459 61.9
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 5.2e-123 445.3 459 61.7
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 6.9e-123 444.9 460 61.7
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.5e-122 443.7 328 80.2
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 1.5e-122 443.7 459 61.9
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 7.6e-122 441.4 453 61.8
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.7e-121 440.3 325 80.6
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 2.9e-121 439.5 327 79.5
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 4.9e-121 438.7 325 80.6
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 1.9e-120 436.8 335 76.7
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 5.4e-120 435.3 325 80.0
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 5.4e-120 435.3 468 60.3
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 7.1e-120 434.9 327 79.2
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.3e-118 429.9 457 60.4
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 1.8e-115 420.2 423 62.9
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 4.0e-115 419.1 346 72.3
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 4.0e-115 419.1 299 76.9
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.3e-115 418.7 334 74.6
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 5.3e-115 418.7 457 59.3
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.9e-115 418.3 321 76.0
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 3.4e-114 416.0 321 75.4
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 5.8e-114 415.2 326 74.8
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 2.9e-113 412.9 331 75.2
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 6.4e-113 411.8 328 75.6
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.9e-112 410.2 349 71.3
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 2.1e-111 406.8 328 75.0
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.3e-110 404.1 440 60.7
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.8e-110 403.7 327 75.8
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 5.1e-110 402.1 327 75.2
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 8.7e-110 401.4 333 72.4
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 5.6e-109 398.7 312 76.0
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 1.3e-108 397.5 312 76.3
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 1.6e-108 397.1 311 75.6
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.8e-108 396.4 436 61.2
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 2.8e-108 396.4 326 74.5
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 3.7e-108 396.0 312 75.3
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 1.4e-107 394.0 410 62.4
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 4.0e-107 392.5 347 69.7
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 4.0e-107 392.5 325 73.5
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 6.9e-107 391.7 362 66.9
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 6.9e-107 391.7 325 74.2
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.0e-106 390.2 365 63.8
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 4.5e-106 389.0 323 71.5
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 4.5e-106 389.0 336 71.1
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.3e-105 387.5 328 70.1
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 2.2e-105 386.7 316 75.9
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.2e-105 386.7 306 77.1
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 2.2e-105 386.7 328 71.6
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 1.1e-104 384.4 335 70.4
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.9e-104 383.6 316 75.3
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 1.9e-104 383.6 317 75.4
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 2.4e-104 383.3 318 74.5
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 4.2e-104 382.5 282 79.8
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.2e-103 380.9 316 74.4
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.2e-103 380.9 301 77.7
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.2e-103 380.9 418 61.5
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 7.9e-103 378.3 331 66.5
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.3e-102 377.5 301 77.4
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 3.0e-102 376.3 302 77.5
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 5.1e-102 375.6 324 72.8
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 2.5e-101 373.2 297 77.4
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 2.5e-101 373.2 297 77.4
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 3.3e-101 372.9 302 77.2
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 3.3e-101 372.9 302 77.2
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 3.1e-99 366.3 323 70.0
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 2.6e-98 363.2 331 67.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 3.4e-98 362.8 315 73.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.4e-98 362.8 288 77.4
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.0e-97 361.3 327 67.6
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.1e-95 353.6 261 73.2
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.8e-94 350.5 332 66.3
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 5.3e-91 339.0 312 68.6
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 5.3e-91 339.0 325 65.2
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 1.9e-88 330.5 247 71.7
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 3.2e-88 329.7 380 57.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 4.6e-87 325.9 330 64.5
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 2.8e-84 316.6 346 61.6
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.3e-78 297.0 312 62.8
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 3.3e-77 293.1 311 61.7
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.5e-74 284.3 237 76.4
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.3e-68 262.3 203 70.9
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 3.8e-65 253.1 228 64.5
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 4.2e-64 249.6 173 74.6
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 3.2e-56 223.4 335 47.2
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 9.4e-56 221.9 137 87.6
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 3.4e-53 213.4 318 47.8
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.2e-50 204.9 275 57.8
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 7.7e-50 202.2 237 47.3
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 7.7e-50 202.2 309 48.9
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 5.0e-49 199.5 225 49.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 7.5e-37 159.1 285 36.8
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 8.3e-36 155.6 211 43.6
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 7.0e-35 152.5 123 65.9
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.7e-28 131.3 77 89.6
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 3.7e-28 130.2 236 48.7
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 6.4e-20 102.8 149 53.0
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.1e-16 92.0 60 78.3
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 3.5e-10 70.5 161 36.6


User provided reference genes

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