Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.7e-185 652.9 436 100.0
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 5.6e-168 594.7 420 90.0
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.4e-78 297.7 431 49.7
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.0e-77 293.9 432 46.5
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 4.3e-75 286.2 435 50.6
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 1.6e-74 284.3 422 46.7
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 2.0e-72 277.3 433 45.3
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 7.5e-72 275.4 432 52.3
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.4e-70 271.2 431 46.9
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 5.0e-68 262.7 421 45.4
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 2.6e-64 250.4 438 43.2
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.3e-63 248.1 367 48.2
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.9e-62 244.2 424 41.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.3e-60 238.0 438 43.6
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 5.1e-60 236.1 425 40.5
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-57 228.4 433 41.3
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-57 228.4 433 41.3
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.3e-57 227.3 424 41.5
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.4e-56 223.0 456 39.0
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 7.6e-56 222.2 429 42.7
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.7e-55 221.1 464 37.9
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 6.4e-55 219.2 422 40.8
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 2.4e-54 217.2 429 41.0
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 4.1e-54 216.5 417 38.8
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.2e-53 214.9 433 40.2
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.5e-53 213.4 417 40.8
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 5.1e-52 209.5 428 43.2
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 3.3e-51 206.8 428 41.6
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 1.2e-50 204.9 450 36.9
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.6e-50 204.5 421 39.9
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.6e-50 203.4 423 37.6
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 3.6e-50 203.4 423 37.6
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 8.1e-50 202.2 432 37.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 1.1e-49 201.8 430 40.2
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.5e-48 198.0 421 37.3
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 9.9e-48 195.3 431 36.7
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 9.9e-48 195.3 421 39.0
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.8e-47 193.4 420 36.4
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.4e-46 191.4 355 39.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.4e-46 189.5 439 35.8
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.4e-46 189.5 421 36.1
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 7.1e-46 189.1 447 35.3
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 9.3e-46 188.7 431 36.7
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.6e-45 188.0 441 35.4
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.6e-45 186.4 441 35.1
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.3e-44 184.9 432 41.4
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 1.7e-44 184.5 416 38.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 3.9e-44 183.3 443 34.8
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.9e-44 183.3 440 35.0
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.1e-43 181.8 438 35.4
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-43 181.4 432 35.6
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.5e-43 180.6 402 35.3
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 9.6e-43 178.7 418 34.0
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-42 177.2 403 36.2
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.6e-42 176.8 403 35.7
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.6e-42 176.8 403 35.7
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 4.8e-42 176.4 237 51.1
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.8e-41 174.5 338 38.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.3e-39 168.3 425 32.2
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.2e-39 167.5 409 33.0
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.4e-38 164.9 403 34.5
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.2e-38 163.7 403 34.7
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.2e-38 163.3 426 31.7
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 5.4e-38 162.9 418 40.0
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 7.1e-38 162.5 361 37.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.1e-38 162.5 419 34.6
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 7.1e-38 162.5 419 34.6
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.0e-36 158.7 259 43.2
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 6.6e-36 156.0 412 36.4
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 1.9e-35 154.5 416 34.9
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 7.3e-35 152.5 425 33.4
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.3e-35 152.5 413 31.0
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 7.3e-35 152.5 413 31.0
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.6e-34 150.2 286 39.5
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.6e-32 144.1 393 34.6
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.9e-31 140.6 412 33.5
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.9e-31 139.8 420 32.1
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-30 138.3 96 70.8
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.9e-30 137.9 400 30.8
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.9e-30 137.9 332 35.8
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 3.0e-28 130.6 335 35.8
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.9e-28 130.2 409 33.5
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.1e-26 124.4 345 35.4
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 3.7e-26 123.6 390 30.5
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.8e-25 121.3 317 34.4
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 4.0e-25 120.2 268 37.7
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 4.0e-25 120.2 297 34.7
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.2e-24 118.6 307 33.9
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 5.8e-24 116.3 263 37.3
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 7.6e-24 115.9 418 28.9
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 7.6e-24 115.9 418 28.2
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 2.9e-23 114.0 260 37.3
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 3.8e-23 113.6 280 38.6
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 3.8e-23 113.6 341 31.1
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 3.2e-22 110.5 265 36.6
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.2e-22 110.5 256 37.5
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 7.1e-22 109.4 341 32.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.1e-21 107.8 327 32.1
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 1.3e-20 105.1 426 31.9
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.3e-20 104.4 338 31.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 2.3e-20 104.4 346 28.0
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 3.0e-20 104.0 281 34.9
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.0e-20 104.0 243 37.0
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 5.1e-20 103.2 249 34.5
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 5.1e-20 103.2 249 34.5
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.1e-20 103.2 406 25.4
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.1e-20 103.2 343 28.3
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 6.7e-20 102.8 259 35.5
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 9.6e-19 99.0 272 34.9
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 9.6e-19 99.0 405 29.1
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.3e-18 98.6 405 29.1
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 2.1e-18 97.8 339 31.0
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 2.1e-18 97.8 339 31.0
SEGI_17788 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.1e-18 97.8 100 52.0
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-17 95.5 263 35.4
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 1.4e-17 95.1 263 34.2
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.9e-17 92.8 333 29.4
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.9e-17 92.8 333 29.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 9.0e-17 92.4 110 46.4
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.2e-16 92.0 412 27.7
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 2.0e-16 91.3 265 33.6
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 3.4e-16 90.5 429 27.3
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 5.9e-16 89.7 244 29.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.0e-15 89.0 265 33.2
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 8.4e-15 85.9 263 34.6
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 8.4e-15 85.9 263 34.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 8.4e-15 85.9 263 34.6
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 8.4e-15 85.9 334 27.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-14 85.5 242 35.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.9e-14 84.7 305 32.1
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 5.5e-14 83.2 266 33.5
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 9.3e-14 82.4 331 28.4
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.6e-13 81.6 353 27.2
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 4.6e-13 80.1 280 35.4
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.0e-12 79.0 276 33.0
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.3e-12 78.6 92 48.9
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.3e-12 78.6 269 37.9
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 2.3e-12 77.8 264 31.8
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 2.3e-12 77.8 264 31.8
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.0e-12 77.4 72 52.8
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 3.0e-12 77.4 407 26.3
unitig_699.g19898 Utricularia gibba HOM05D004568 ORTHO05D005343 1.5e-11 75.1 76 52.6
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 4.3e-11 73.6 409 28.4
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.3e-10 72.0 214 33.6
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.6e-10 71.6 285 28.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 8.2e-10 69.3 265 36.2
Ah.12g062580 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.8e-09 68.2 77 51.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 3.1e-09 67.4 264 31.4
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 4.1e-09 67.0 372 26.6
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.2e-08 65.5 251 29.9
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 1.5e-08 65.1 64 54.7
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 4.5e-08 63.5 87 42.5
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 7.7e-08 62.8 263 31.9
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.5e-06 57.8 123 32.5


User provided reference genes

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