Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.0e-227 793.1 415 100.0
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 2.0e-167 592.8 325 96.0
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 3.7e-84 316.2 325 53.8
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 4.8e-84 315.8 329 52.6
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 9.0e-83 311.6 326 55.5
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 3.2e-72 276.6 341 47.8
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.2e-71 274.6 324 48.8
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 1.0e-70 271.6 256 57.4
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 5.1e-70 269.2 269 53.9
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.3e-65 254.6 337 46.6
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 1.1e-61 241.5 285 45.6
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 2.2e-57 227.3 212 59.0
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 3.6e-55 219.9 267 46.1
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 1.8e-54 217.6 282 44.3
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.5e-53 214.5 270 45.6
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 3.3e-53 213.4 270 45.9
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 3.3e-53 213.4 270 45.9
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.4e-51 207.2 260 42.7
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 4.1e-51 206.5 324 38.0
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 5.3e-51 206.1 276 41.3
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 9.1e-51 205.3 262 44.3
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.6e-50 204.5 276 44.9
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 2.6e-50 203.8 290 39.0
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 4.5e-50 203.0 268 39.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 2.2e-49 200.7 272 41.2
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 5.0e-49 199.5 270 42.2
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.5e-48 198.0 268 41.0
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.2e-47 194.9 269 44.2
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.6e-47 193.4 256 40.6
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 4.7e-47 193.0 263 44.1
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 1.4e-46 191.4 272 41.5
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.4e-46 191.4 290 38.6
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 3.0e-46 190.3 267 39.3
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 2.0e-45 187.6 329 39.8
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 5.7e-45 186.0 288 38.5
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 9.7e-45 185.3 266 39.5
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.7e-44 184.5 271 38.4
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.8e-43 181.0 272 41.2
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 2.7e-42 177.2 276 39.5
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 7.7e-42 175.6 298 36.6
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.9e-41 173.7 277 39.7
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 3.8e-41 173.3 331 37.2
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 6.5e-41 172.6 267 39.7
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 1.5e-40 171.4 266 39.8
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 1.5e-40 171.4 277 39.0
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 5.5e-40 169.5 267 39.0
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 7.2e-40 169.1 272 36.4
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.2e-39 168.3 306 38.2
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 3.6e-39 166.8 218 45.0
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 3.6e-39 166.8 306 37.9
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 4.7e-39 166.4 270 37.0
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 5.2e-38 162.9 278 39.2
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 2.0e-37 161.0 261 37.5
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.6e-37 160.6 284 34.5
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 5.7e-37 159.5 274 38.7
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 9.8e-37 158.7 289 34.3
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 2.4e-35 154.1 277 38.6
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.7e-34 150.6 268 35.1
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 3.5e-34 150.2 281 37.7
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 3.5e-34 150.2 260 37.7
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 4.5e-34 149.8 303 33.0
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 1.0e-33 148.7 257 38.1
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.9e-33 147.1 190 44.7
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 3.8e-33 146.7 268 34.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.5e-33 146.0 261 35.6
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 6.5e-33 146.0 343 32.1
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 1.5e-32 144.8 288 35.4
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 1.2e-31 141.7 276 34.8
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 8.0e-31 139.0 287 32.1
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 1.4e-30 138.3 216 36.6
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 8.8e-30 135.6 202 38.1
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 1.2e-29 135.2 276 34.4
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 1.2e-29 135.2 276 34.4
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.2e-29 135.2 324 32.4
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 1.5e-29 134.8 275 35.6
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 9.8e-29 132.1 276 33.3
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 1.3e-28 131.7 277 32.9
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 3.7e-28 130.2 270 34.4
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 1.1e-27 128.6 274 33.2
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 5.4e-27 126.3 262 31.3
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 2.7e-26 124.0 283 33.2
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 3.5e-26 123.6 181 43.6
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 1.9e-24 117.9 167 41.9
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 8.9e-22 109.0 277 28.5
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 9.8e-21 105.5 134 41.8
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 2.2e-20 104.4 197 36.5
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 4.6e-18 96.7 257 27.6
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 2.6e-13 80.9 93 50.5
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 9.8e-13 79.0 120 36.7
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 2.9e-12 77.4 183 29.0
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-11 75.1 122 39.3
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 3.5e-10 70.5 265 23.4
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 4.6e-10 70.1 309 23.3
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 1.7e-09 68.2 252 20.6
CiPaw.05G012600 Carya illinoinensis HOM05D001524 ORTHO05D001392 8.6e-09 65.9 249 21.3
MELO3C018484.2 Cucumis melo HOM05D001524 ORTHO05D001392 1.1e-08 65.5 264 22.0
Glyma.20G129900 Glycine max HOM05D001524 ORTHO05D001392 1.1e-08 65.5 251 21.1
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 1.9e-08 64.7 251 21.5
Zm00001eb044960 Zea mays HOM05D001524 ORTHO05D001392 1.9e-08 64.7 251 26.3
CAN.G606.6 Capsicum annuum HOM05D001524 ORTHO05D001392 2.5e-08 64.3 250 20.8
Oeu037254.1 Olea europaea HOM05D001524 ORTHO05D001392 2.5e-08 64.3 249 20.1
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 4.3e-08 63.5 252 23.8
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 4.3e-08 63.5 250 21.6
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 4.3e-08 63.5 248 21.0
Ah.01g018320 Amaranthus hybridus HOM05D001524 ORTHO05D001392 9.5e-08 62.4 249 20.9
PGR042G1104 Punica granatum HOM05D001524 ORTHO05D001392 9.5e-08 62.4 253 23.3
VMungo0720G2936 Vigna mungo HOM05D001524 ORTHO05D001392 9.5e-08 62.4 251 22.3
Psat6g223280 Pisum sativum HOM05D001524 ORTHO05D001392 1.2e-07 62.0 252 20.6
CsaV3_7G008220 Cucumis sativus L. HOM05D001524 ORTHO05D001392 1.6e-07 61.6 254 22.8
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 1.6e-07 61.6 248 20.2
ClCG02G006440 Citrullus lanatus HOM05D001524 ORTHO05D001392 2.1e-07 61.2 239 22.6
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 2.1e-07 61.2 247 20.2
CiPaw.05G012500 Carya illinoinensis HOM05D001524 ORTHO05D001392 2.8e-07 60.8 249 20.5
Sed0022824 Sechium edule HOM05D001524 ORTHO05D001392 2.8e-07 60.8 240 21.7
Cfa004594 Carpinus fangiana HOM05D001524 ORTHO05D001392 3.6e-07 60.5 252 24.6
AUR62010321 Chenopodium quinoa HOM05D001524 ORTHO05D001392 3.6e-07 60.5 250 22.0
Lalb_Chr21g0308301 Lupinus albus HOM05D001524 ORTHO05D001392 4.7e-07 60.1 252 18.7
MD10G1098800 Malus domestica HOM05D001524 ORTHO05D001392 4.7e-07 60.1 251 20.7
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 4.7e-07 60.1 250 20.8
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 4.7e-07 60.1 250 21.2
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 6.2e-07 59.7 243 22.2
SEGI_18471 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.2e-07 59.7 258 22.5
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 6.2e-07 59.7 250 20.4
Cc02_g19330 Coffea canephora HOM05D001524 ORTHO05D001392 8.1e-07 59.3 253 19.8
MD10G1147400 Malus domestica HOM05D001524 ORTHO05D001392 8.1e-07 59.3 251 20.7
SEGI_16365 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 8.1e-07 59.3 127 32.3
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 1.4e-06 58.5 227 22.0
BcaB08g34583 Brassica carinata HOM05D001524 ORTHO05D001392 1.4e-06 58.5 249 21.7
Sopen01g049740 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 58.5 198 22.2
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 1.8e-06 58.2 255 21.2
AUR62010320 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.8e-06 58.2 250 20.4
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 1.8e-06 58.2 248 21.0
PGSC0003DMG400025765 Solanum tuberosum HOM05D001524 ORTHO05D001392 1.8e-06 58.2 252 20.6
Ca_11067_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 2.3e-06 57.8 232 24.1
Peaxi162Scf00305g00099 Petunia axillaris HOM05D001524 ORTHO05D001392 2.3e-06 57.8 116 31.9
Solyc01g107540.4 Solanum lycopersicum HOM05D001524 ORTHO05D001392 2.3e-06 57.8 265 19.2
Zm00001eb221040 Zea mays HOM05D001524 ORTHO05D001392 2.3e-06 57.8 228 24.1
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 3.1e-06 57.4 250 19.6
PSO675G6294 Papaver somniferum HOM05D001524 ORTHO05D001392 3.1e-06 57.4 179 24.6
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 3.1e-06 57.4 250 18.4
Sp3g28460 Schrenkiella parvula HOM05D001524 ORTHO05D001392 3.1e-06 57.4 250 21.6
Ah.01g018330 Amaranthus hybridus HOM05D001524 ORTHO05D001392 4.0e-06 57.0 155 25.8
SEGI_23215 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 4.0e-06 57.0 253 21.3
Atru.chr5.2479 Acer truncatum HOM05D001524 ORTHO05D001392 5.2e-06 56.6 250 20.4
CSS0038199 Camellia sinensis var. sinensis HOM05D001524 ORTHO05D001392 5.2e-06 56.6 228 23.7
Migut.B00394 Erythranthe guttata HOM05D001524 ORTHO05D001392 5.2e-06 56.6 253 22.1
Lj1g0018373 Lotus japonicus HOM05D001524 ORTHO05D001392 5.2e-06 56.6 234 20.1
Medtr1g107225 Medicago truncatula HOM05D001524 ORTHO05D001392 5.2e-06 56.6 191 25.1
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 5.2e-06 56.6 236 19.1
Cfa021156 Carpinus fangiana HOM05D001524 ORTHO05D001392 6.8e-06 56.2 251 19.9
Lalb_Chr12g0210281 Lupinus albus HOM05D001524 ORTHO05D001392 6.8e-06 56.2 183 24.0
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 8.9e-06 55.8 138 25.4
TPR.G3275 Trifolium pratense HOM05D001524 ORTHO05D001392 8.9e-06 55.8 239 24.3


User provided reference genes

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