Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 4.0e-257 891.0 467 100.0
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 3.4e-171 605.5 321 98.1
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 7.7e-131 471.5 471 59.7
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.4e-129 467.2 424 63.9
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 3.2e-129 466.1 462 60.4
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 4.3e-126 455.7 467 58.9
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 1.6e-120 437.2 457 57.3
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 7.9e-120 434.9 461 57.5
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 2.3e-119 433.3 463 59.4
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 1.3e-117 427.6 474 55.1
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 7.7e-115 418.3 461 52.7
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 1.3e-114 417.5 424 58.3
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 3.3e-110 402.9 424 57.8
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 2.8e-109 399.8 421 56.5
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 9.1e-108 394.8 459 50.3
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 1.9e-105 387.1 461 51.0
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 1.9e-105 387.1 462 51.3
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 2.1e-104 383.6 469 50.3
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 5.2e-103 379.0 469 49.3
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.0e-102 377.1 452 50.2
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 9.8e-102 374.8 453 48.6
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 2.8e-101 373.2 456 48.0
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 4.8e-101 372.5 455 49.9
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 5.9e-99 365.5 474 48.3
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 1.1e-97 361.3 449 50.8
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.9e-97 360.5 446 50.4
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 3.2e-97 359.8 457 48.1
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 3.2e-97 359.8 445 49.9
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 9.4e-97 358.2 329 58.7
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 3.6e-96 356.3 329 58.4
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 6.1e-96 355.5 551 43.0
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 8.0e-96 355.1 458 48.0
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 1.0e-95 354.8 464 46.6
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.0e-95 354.8 446 50.4
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 5.2e-95 352.4 449 49.2
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 8.8e-95 351.7 521 44.3
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 3.4e-94 349.7 458 47.4
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.7e-93 347.4 476 45.2
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 1.8e-92 344.0 460 46.5
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 2.4e-92 343.6 501 45.5
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.4e-92 342.4 441 49.7
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 2.0e-91 340.5 454 47.6
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 3.5e-91 339.7 472 45.3
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 2.3e-90 337.0 482 44.0
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.9e-90 336.7 474 44.3
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 5.0e-90 335.9 485 43.5
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 5.0e-90 335.9 464 47.0
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 3.3e-89 333.2 478 43.5
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 3.3e-89 333.2 472 45.3
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.3e-89 333.2 436 47.9
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 2.1e-88 330.5 470 47.4
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 6.1e-88 328.9 479 45.3
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 8.0e-88 328.6 474 45.6
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.0e-87 328.2 495 41.8
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 2.3e-87 327.0 479 45.3
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 4.0e-87 326.2 475 44.4
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 5.2e-87 325.9 453 46.1
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 8.9e-87 325.1 332 54.5
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 1.5e-86 324.3 454 45.2
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 7.5e-86 322.0 484 43.8
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 9.8e-86 321.6 373 50.4
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 1.3e-85 321.2 469 45.2
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 1.7e-85 320.9 502 44.4
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.7e-85 320.9 454 46.0
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 6.4e-85 318.9 444 46.4
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 8.3e-85 318.5 373 49.6
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.4e-84 317.8 473 43.6
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 1.8e-84 317.4 498 42.8
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 5.4e-84 315.8 467 43.5
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 5.4e-84 315.8 336 52.1
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 7.0e-84 315.5 463 43.2
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 1.2e-83 314.7 492 43.1
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 4.6e-83 312.8 477 44.2
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 5.9e-83 312.4 461 44.0
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 7.8e-83 312.0 493 42.2
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 3.9e-82 309.7 463 44.7
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 5.0e-82 309.3 470 42.8
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 5.0e-82 309.3 477 44.0
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 6.6e-82 308.9 449 44.5
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 8.6e-82 308.5 449 44.3
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 5.6e-81 305.8 498 41.6
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 9.5e-81 305.1 470 42.6
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 8.0e-80 302.0 475 43.2
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 1.8e-79 300.8 475 41.9
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 1.8e-79 300.8 472 41.9
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 5.2e-79 299.3 506 40.7
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 8.9e-79 298.5 478 44.1
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 9.8e-78 295.0 453 42.2
Glyma.20G097300 Glycine max HOM05D001340 ORTHO05D005342 2.2e-77 293.9 259 64.5
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.9e-77 293.5 519 41.4
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 3.2e-76 290.0 468 42.1
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.0e-74 285.0 486 41.8
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 1.0e-74 285.0 441 43.8
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 5.6e-73 279.3 384 47.7
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-72 278.1 329 49.8
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 1.2e-72 278.1 461 43.6
Actinidia35521 Actinidia chinensis HOM05D001340 ORTHO05D005342 1.8e-71 274.2 282 53.9
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 5.2e-71 272.7 497 38.2
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 1.5e-70 271.2 462 42.0
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 2.0e-70 270.8 454 44.1
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 7.5e-70 268.9 436 42.4
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 1.4e-68 264.6 442 41.2
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 9.2e-68 261.9 461 39.9
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 4.6e-67 259.6 412 45.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 8.6e-66 255.4 445 40.4
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 6.8e-63 245.7 378 42.3
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 8.9e-63 245.4 327 50.5
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 1.5e-62 244.6 462 36.4
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 1.9e-60 237.7 429 37.3
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.9e-60 237.7 422 39.6
QL03p014779 Quercus lobata HOM05D001340 ORTHO05D005342 1.9e-60 237.7 208 59.1
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 5.1e-58 229.6 352 45.7
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 5.1e-58 229.6 252 56.0
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 2.9e-53 213.8 398 38.7
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.8e-53 213.4 396 40.2
QL03p008578 Quercus lobata HOM05D001340 ORTHO05D005342 3.2e-52 210.3 232 50.9
QL03p008601 Quercus lobata HOM05D001340 ORTHO05D005342 6.0e-51 206.1 168 60.1
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 9.9e-46 188.7 415 36.1
QL03p013877 Quercus lobata HOM05D001340 ORTHO05D005342 1.4e-44 184.9 254 43.7
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 1.0e-42 178.7 411 36.0
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 3.3e-41 173.7 394 32.2
Prupe.3G076000 Prunus persica HOM05D001340 ORTHO05D005342 1.4e-39 168.3 229 46.3
SEGI_27730 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 3.1e-39 167.2 193 46.6
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.3e-37 161.8 386 31.3
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 1.7e-37 161.4 527 29.0
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 1.9e-36 157.9 109 78.0
QL03p014849 Quercus lobata HOM05D001340 ORTHO05D005342 7.9e-35 152.5 144 55.6
Sabra05G0010200 Salix brachista HOM05D001340 ORTHO05D005342 3.0e-34 150.6 445 33.3
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 1.4e-31 141.7 332 29.2
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 4.0e-31 140.2 130 59.2
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 1.2e-30 138.7 261 40.6
Gorai.009G392200 Gossypium raimondii HOM05D001340 ORTHO05D005342 4.5e-30 136.7 97 66.0
Gohir.D10G111266 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.9e-28 131.3 97 62.9
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.9e-28 131.3 322 37.0
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 1.5e-25 121.7 237 41.8
QL03p013832 Quercus lobata HOM05D001340 ORTHO05D005342 4.3e-25 120.2 174 43.7
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 3.1e-23 114.0 239 34.7
QL03p014812 Quercus lobata HOM05D001340 ORTHO05D025918 8.4e-21 105.9 167 42.5
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 4.6e-19 100.1 69 71.0
RcHm_v2.0_Chr3g0457161 Rosa chinensis HOM05D001340 ORTHO05D005342 3.3e-17 94.0 65 64.6
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 3.7e-16 90.5 159 35.8
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 6.3e-16 89.7 127 38.6
PRCOL_00000652 Prasinoderma coloniale HOM05D001340 ORTHO05D005342 2.4e-15 87.8 383 24.8
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 3.1e-15 87.4 418 24.2
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 3.1e-15 87.4 127 37.8
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 1.5e-14 85.1 200 35.5
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 6.5e-13 79.7 72 55.6
Nn1g02026 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.1e-12 79.0 57 66.7
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.4e-12 78.6 68 54.4
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.9e-12 78.2 68 55.9
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 3.2e-12 77.4 72 51.4
Cre02.g084900 Chlamydomonas reinhardtii HOM05D001340 ORTHO05D005342 4.2e-12 77.0 358 23.5
Gorai.005G157900 Gossypium raimondii HOM05D001340 ORTHO05D005342 2.1e-11 74.7 83 49.4
AUR62015693 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.1e-09 68.9 65 53.8
TWI59G1224 Tripterygium wilfordii HOM05D001310 ORTHO05D001283 1.1e-07 62.4 56 51.8
Migut.D01540 Erythranthe guttata HOM05D001310 ORTHO05D001283 2.4e-07 61.2 53 54.7
PGSC0003DMG400008293 Solanum tuberosum HOM05D001340 ORTHO05D005342 4.1e-07 60.5 61 52.5
SGA_v2.0_scaffold36G14382 Striga asiatica HOM05D001310 ORTHO05D001283 4.1e-07 60.5 69 43.5
Aa31LG3G17590 Aethionema arabicum HOM05D001310 ORTHO05D001283 5.3e-07 60.1 59 49.2
SalBow5G0105 Salvia bowleyana HOM05D001310 ORTHO05D001283 5.3e-07 60.1 56 48.2
Sopen10g017560 Solanum pennellii HOM05D001310 ORTHO05D001283 5.3e-07 60.1 56 50.0
CAN.G1.39 Capsicum annuum HOM05D001310 ORTHO05D001283 1.2e-06 58.9 56 50.0
Migut.B00605 Erythranthe guttata HOM05D001310 ORTHO05D001283 1.2e-06 58.9 56 48.2
Lj5A239G80 Lonicera japonica HOM05D001310 ORTHO05D001283 1.5e-06 58.5 56 48.2
EL10Ac5g11565 Beta vulgaris HOM05D001310 ORTHO05D001283 2.0e-06 58.2 66 45.5
Sed0028182 Sechium edule HOM05D001310 ORTHO05D001283 2.0e-06 58.2 56 50.0
SEGI_22675 Sequoiadendron giganteum HOM05D001310 ORTHO05D001283 2.0e-06 58.2 53 49.1
Sc18g0006830 Simmondsia chinensis HOM05D001310 ORTHO05D001283 2.0e-06 58.2 56 50.0
Solyc10g047300.2 Solanum lycopersicum HOM05D001310 ORTHO05D001283 2.0e-06 58.2 56 48.2
CsaV3_7G006560 Cucumis sativus L. HOM05D001310 ORTHO05D001283 2.6e-06 57.8 56 50.0
ClCG09G015490 Citrullus lanatus HOM05D001310 ORTHO05D001283 3.4e-06 57.4 53 50.9
COL.COLO4_04375 Corchorus olitorius HOM05D001310 ORTHO05D001283 3.4e-06 57.4 56 50.0
Lj5C158T11 Lonicera japonica HOM05D001310 ORTHO05D001283 3.4e-06 57.4 66 43.9
MD06G1227100 Malus domestica HOM05D001310 ORTHO05D001283 3.4e-06 57.4 56 50.0
Pp3c21_15890 Physcomitrium patens HOM05D001310 ORTHO05D001283 3.4e-06 57.4 65 49.2
HanXRQChr05g0142641 Helianthus annuus HOM05D001310 ORTHO05D001283 5.9e-06 56.6 53 50.9
Lj6g0024241 Lotus japonicus HOM05D001310 ORTHO05D001283 7.7e-06 56.2 56 48.2


User provided reference genes

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