Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 1.1e-206 723.0 350 100.0
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 7.9e-181 637.1 404 81.2
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 9.9e-107 391.0 328 58.5
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 7.3e-94 348.2 207 80.2
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 2.4e-92 343.2 207 78.7
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 3.1e-92 342.8 207 80.2
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 5.8e-91 338.6 207 76.8
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 4.9e-90 335.5 207 77.3
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 6.0e-88 328.6 207 74.4
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 4.8e-85 318.9 207 72.9
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 1.1e-84 317.8 207 69.1
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 5.3e-84 315.5 207 71.0
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.2e-83 314.3 206 69.9
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 2.0e-83 313.5 204 70.6
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 2.2e-82 310.1 204 68.6
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 3.8e-82 309.3 207 68.6
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 8.4e-82 308.1 204 68.1
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 1.4e-81 307.4 207 68.1
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.9e-81 307.0 204 68.1
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 4.2e-81 305.8 208 67.8
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 7.1e-81 305.1 205 66.8
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 2.7e-80 303.1 207 66.2
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 3.5e-80 302.8 205 66.3
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 3.5e-80 302.8 234 60.7
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 4.6e-80 302.4 207 66.2
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.3e-79 300.8 205 65.9
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.3e-79 300.8 187 78.1
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 1.8e-79 300.4 204 67.6
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.3e-79 300.1 205 65.9
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 3.0e-79 299.7 205 67.3
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 5.1e-79 298.9 204 68.6
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 6.7e-79 298.5 205 67.8
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 1.1e-78 297.7 206 66.5
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 3.3e-78 296.2 205 66.3
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 7.4e-78 295.0 205 64.9
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 1.3e-77 294.3 206 66.0
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 1.6e-77 293.9 204 66.7
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 1.1e-76 291.2 208 63.5
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.1e-76 291.2 205 66.8
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 1.8e-76 290.4 206 66.0
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 1.8e-76 290.4 211 64.5
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 1.8e-76 290.4 211 64.5
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 3.1e-76 289.7 204 64.7
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 3.1e-76 289.7 208 64.4
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 5.3e-76 288.9 206 63.6
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 5.3e-76 288.9 206 65.0
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 6.9e-76 288.5 205 63.4
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 1.5e-75 287.3 205 65.4
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 2.0e-75 287.0 206 62.6
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 2.0e-75 287.0 205 65.9
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 4.5e-75 285.8 206 62.6
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 4.5e-75 285.8 205 64.9
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 9.9e-75 284.6 206 61.7
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 1.7e-74 283.9 206 62.6
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 2.9e-74 283.1 206 62.6
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 3.8e-74 282.7 213 62.0
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 4.9e-74 282.3 206 61.7
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 4.9e-74 282.3 206 63.1
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 6.4e-74 282.0 199 65.3
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 8.4e-74 281.6 206 61.7
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 1.9e-73 280.4 205 62.9
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 5.5e-73 278.9 206 61.7
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 5.5e-73 278.9 206 61.7
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 9.3e-73 278.1 206 60.7
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 1.2e-72 277.7 208 60.1
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 1.8e-71 273.9 208 60.6
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 2.3e-71 273.5 204 59.8
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 2.3e-71 273.5 207 59.4
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 3.9e-71 272.7 207 60.9
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 5.1e-71 272.3 162 78.4
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 5.6e-70 268.9 205 59.0
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 1.8e-68 263.8 203 61.1
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 9.0e-68 261.5 206 61.2
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 2.0e-67 260.4 206 61.2
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 2.0e-67 260.4 208 58.7
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 1.0e-66 258.1 205 58.0
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 2.9e-66 256.5 184 63.0
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 4.9e-66 255.8 185 64.3
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 6.5e-66 255.4 205 60.0
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 3.2e-65 253.1 165 70.3
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 3.5e-64 249.6 207 58.0
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 4.6e-64 249.2 184 63.6
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 1.5e-62 244.2 209 54.5
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 4.3e-62 242.7 175 64.6
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 8.2e-61 238.4 162 66.7
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 6.9e-60 235.3 185 58.4
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 1.9e-57 227.3 187 56.1
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 5.5e-57 225.7 216 50.0
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.2e-56 224.6 164 63.4
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.2e-56 224.6 214 50.0
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 1.2e-56 224.6 214 50.0
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.8e-55 220.7 162 64.2
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 1.3e-53 214.5 210 51.4
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 2.9e-50 203.4 150 63.3
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 6.5e-50 202.2 147 65.3
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 2.5e-49 200.3 162 58.6
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 2.1e-48 197.2 150 58.0
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 7.4e-46 188.7 147 56.5
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 2.2e-45 187.2 123 69.9
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 4.8e-45 186.0 168 54.2
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 1.3e-42 177.9 215 40.5
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 3.8e-42 176.4 119 65.5
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 5.9e-35 152.5 106 60.4
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 5.9e-35 152.5 106 60.4
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 1.0e-34 151.8 162 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 9.4e-33 145.2 156 46.8
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.5e-30 137.9 148 50.7
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 9.1e-28 128.6 174 39.1
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 1.2e-27 128.3 168 39.9
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 4.8e-21 106.3 273 26.7
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 1.2e-19 101.7 106 46.2
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 4.5e-19 99.8 142 37.3
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 7.7e-19 99.0 126 41.3
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 6.8e-15 85.9 56 62.5
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 2.8e-13 80.5 58 60.3
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 2.3e-07 60.8 54 42.6


User provided reference genes

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