Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 4.8e-53 211.1 121 100.0
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 5.0e-42 174.5 120 86.7
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.4e-36 156.4 120 78.3
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 5.4e-36 154.5 126 77.8
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 7.8e-35 150.6 120 75.0
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 3.2e-28 128.6 120 67.5
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 3.2e-28 128.6 120 59.2
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 5.4e-28 127.9 120 60.8
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 7.0e-28 127.5 117 60.7
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 1.6e-27 126.3 121 57.0
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 2.7e-27 125.6 120 57.5
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 3.5e-27 125.2 110 62.7
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 4.6e-27 124.8 110 59.1
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.6e-27 124.8 120 55.8
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 4.6e-27 124.8 120 55.8
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 7.8e-27 124.0 93 74.2
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 7.8e-27 124.0 117 59.8
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.0e-26 123.6 120 55.8
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 5.0e-26 121.3 121 63.6
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 8.6e-26 120.6 118 53.4
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 1.1e-25 120.2 109 60.6
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 1.1e-25 120.2 120 57.5
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.1e-25 120.2 121 53.7
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 1.1e-25 120.2 109 60.6
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 2.5e-25 119.0 109 58.7
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 2.5e-25 119.0 117 62.4
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 4.3e-25 118.2 113 58.4
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 7.3e-25 117.5 121 62.8
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 7.3e-25 117.5 121 63.6
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 7.3e-25 117.5 109 57.8
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 9.5e-25 117.1 109 57.8
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.2e-24 116.7 110 54.5
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 1.2e-24 116.7 123 59.3
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.6e-24 116.3 111 55.9
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.6e-24 116.3 125 52.0
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.6e-24 116.3 124 54.0
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.8e-24 115.5 105 65.7
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 3.6e-24 115.2 115 58.3
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 3.6e-24 115.2 110 54.5
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.6e-24 115.2 110 54.5
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.6e-24 115.2 110 54.5
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 3.6e-24 115.2 110 54.5
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.7e-24 114.8 125 50.4
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 6.2e-24 114.4 113 61.1
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 6.2e-24 114.4 105 57.1
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 8.0e-24 114.0 110 53.6
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 1.4e-23 113.2 116 59.5
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 1.8e-23 112.8 109 56.9
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 2.3e-23 112.5 128 53.9
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 2.3e-23 112.5 128 53.9
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 3.1e-23 112.1 124 48.4
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 3.1e-23 112.1 109 56.0
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 3.1e-23 112.1 120 55.0
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 3.1e-23 112.1 120 49.2
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 4.0e-23 111.7 109 56.0
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 5.2e-23 111.3 119 49.6
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 8.9e-23 110.5 112 51.8
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 8.9e-23 110.5 121 55.4
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 8.9e-23 110.5 109 52.3
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.5e-22 109.8 109 55.0
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 1.5e-22 109.8 116 53.4
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.5e-22 109.8 123 49.6
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 2.6e-22 109.0 111 65.8
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 3.4e-22 108.6 122 53.3
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 3.4e-22 108.6 123 49.6
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 4.4e-22 108.2 133 51.1
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 4.4e-22 108.2 133 51.1
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 4.4e-22 108.2 133 51.1
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 5.8e-22 107.8 109 58.7
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 5.8e-22 107.8 118 58.5
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 5.8e-22 107.8 118 58.5
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 7.5e-22 107.5 120 51.7
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 7.5e-22 107.5 116 53.4
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 7.5e-22 107.5 118 59.3
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.3e-21 106.7 115 50.4
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 1.7e-21 106.3 118 59.3
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 2.2e-21 105.9 124 48.4
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 3.7e-21 105.1 105 55.2
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 3.7e-21 105.1 124 50.8
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 8.3e-21 104.0 121 52.9
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 8.3e-21 104.0 109 62.4
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 1.9e-20 102.8 119 52.1
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.1e-20 101.7 122 50.0
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.1e-20 101.7 122 50.0
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 4.1e-20 101.7 123 48.8
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 7.0e-20 100.9 116 47.4
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-19 100.1 80 75.0
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.2e-19 100.1 102 52.9
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 2.7e-19 99.0 84 70.2
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 2.7e-19 99.0 102 52.0
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 2.7e-19 99.0 102 52.0
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 3.5e-19 98.6 114 50.9
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 7.8e-19 97.4 102 52.9
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.0e-18 97.1 119 47.1
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 1.0e-18 97.1 100 55.0
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 3.9e-18 95.1 111 57.7
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 5.0e-18 94.7 128 46.1
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 1.9e-17 92.8 142 45.1
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 5.6e-17 91.3 111 48.6
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.1e-15 87.0 118 45.8
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.4e-15 86.7 108 48.1
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 5.2e-15 84.7 62 67.7
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 8.9e-15 84.0 57 71.9
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 2.0e-14 82.8 66 66.7
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 5.8e-14 81.3 57 68.4
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 9.8e-14 80.5 50 76.0
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 1.3e-13 80.1 57 66.7
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 4.9e-13 78.2 62 62.9
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 6.4e-13 77.8 54 70.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 2.4e-12 75.9 57 66.7
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 6.8e-07 57.8 82 43.9


User provided reference genes

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