Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y229LN Arachis hypogaea HOM05D000993 ORTHO05D083657 6.7e-42 173.7 95 100.0
arahy.Tifrunner.gnm1.ann1.RZC8RT Arachis hypogaea HOM05D000993 ORTHO05D001518 8.0e-11 70.5 47 83.0
arahy.Tifrunner.gnm1.ann1.UV31WR Arachis hypogaea HOM05D000993 ORTHO05D001518 2.3e-10 68.9 47 80.9
Glyma.17G164500 Glycine max HOM05D000993 ORTHO05D001518 4.0e-10 68.2 47 78.7
Lj4g0019758 Lotus japonicus HOM05D000993 ORTHO05D001518 6.8e-10 67.4 47 76.6
Phvul.003G237900 Phaseolus vulgaris HOM05D000993 ORTHO05D001518 2.0e-09 65.9 47 74.5
TPR.G23887 Trifolium pratense HOM05D000993 ORTHO05D001518 3.4e-09 65.1 47 76.6
VMungo0251G3172 Vigna mungo HOM05D000993 ORTHO05D001518 3.4e-09 65.1 47 72.3
Glyma.05G102800 Glycine max HOM05D000993 ORTHO05D001518 4.4e-09 64.7 47 74.5
Ca_24711_v3 Cicer arietinum L. HOM05D000993 ORTHO05D001518 7.5e-09 63.9 43 76.7
Ca_24726_v3 Cicer arietinum L. HOM05D000993 ORTHO05D001518 7.5e-09 63.9 43 76.7
COL.COLO4_11524 Corchorus olitorius HOM05D000993 ORTHO05D001518 7.5e-09 63.9 47 74.5
Medtr5g016150 Medicago truncatula HOM05D000993 ORTHO05D001518 7.5e-09 63.9 43 76.7
Atru.chr3.209 Acer truncatum HOM05D000993 ORTHO05D001518 9.8e-09 63.5 47 74.5
Gohir.A02G153600 Gossypium hirsutum HOM05D000993 ORTHO05D001518 9.8e-09 63.5 47 74.5
Gorai.003G028500 Gossypium raimondii HOM05D000993 ORTHO05D001518 9.8e-09 63.5 47 74.5
Manes.13G114700 Manihot esculenta HOM05D000993 ORTHO05D001518 9.8e-09 63.5 47 72.3
TPR.G20945 Trifolium pratense HOM05D000993 ORTHO05D001518 9.8e-09 63.5 43 76.7
Lalb_Chr05g0213491 Lupinus albus HOM05D000993 ORTHO05D001518 2.2e-08 62.4 43 79.1
ATR0661G496 Amborella trichopoda HOM05D000993 ORTHO05D001518 3.7e-08 61.6 58 55.2
Cpa.g.sc6.57 Carica papaya HOM05D000993 ORTHO05D001518 3.7e-08 61.6 47 72.3
Duzib147G1271 Durio zibethinus HOM05D000993 ORTHO05D001518 3.7e-08 61.6 47 72.3
Thecc.01G067700 Theobroma cacao HOM05D000993 ORTHO05D001518 3.7e-08 61.6 47 72.3
TWI09G0977 Tripterygium wilfordii HOM05D000993 ORTHO05D001518 3.7e-08 61.6 47 74.5
Gohir.D03G026800 Gossypium hirsutum HOM05D000993 ORTHO05D001518 4.9e-08 61.2 47 72.3
Cfa004092 Carpinus fangiana HOM05D000993 ORTHO05D001518 6.3e-08 60.8 47 70.2
Ca_13934_v3 Cicer arietinum L. HOM05D000993 ORTHO05D001518 6.3e-08 60.8 47 70.2
Medtr4g095310 Medicago truncatula HOM05D000993 ORTHO05D001518 6.3e-08 60.8 47 72.3
Sabra07G0045700 Salix brachista HOM05D000993 ORTHO05D001518 8.3e-08 60.5 47 70.2
TAR628G0754 Trochodendron aralioides HOM05D000993 ORTHO05D001518 8.3e-08 60.5 47 68.1
CiPaw.02G004900 Carya illinoinensis HOM05D000993 ORTHO05D001518 1.1e-07 60.1 47 72.3
Duzib187G1079 Durio zibethinus HOM05D000993 ORTHO05D001518 1.1e-07 60.1 47 70.2
Eucgr.H02271 Eucalyptus grandis HOM05D000993 ORTHO05D001518 1.1e-07 60.1 47 72.3
Manes.12G112700 Manihot esculenta HOM05D000993 ORTHO05D001518 1.8e-07 59.3 47 61.7
Psat4g083040 Pisum sativum HOM05D000993 ORTHO05D001518 1.8e-07 59.3 47 72.3
Prupe.6G225000 Prunus persica HOM05D000993 ORTHO05D001518 1.8e-07 59.3 46 69.6
PGR102G0004 Punica granatum HOM05D000993 ORTHO05D001518 1.8e-07 59.3 47 66.0
CANSAT01G2109 Cannabis sativa HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 70.2
CANSAT64G0362 Cannabis sativa HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 70.2
CiPaw.01G008000 Carya illinoinensis HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 70.2
Haze_15322 Corylus avellana HOM05D000993 ORTHO05D001518 2.4e-07 58.9 46 67.4
FvH4_1g17110 Fragaria vesca HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 66.0
FAN19G3049 Fragaria x ananassa HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 66.0
FAN28G2799 Fragaria x ananassa HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 66.0
Nn5g30496 Nelumbo nucifera HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 66.0
Potri.007G052000 Populus trichocarpa HOM05D000993 ORTHO05D001518 2.4e-07 58.9 47 68.1
MD02G1181300 Malus domestica HOM05D000993 ORTHO05D001518 3.1e-07 58.5 47 66.0
Os03g0437600 Oryza sativa ssp. japonica HOM05D000993 ORTHO05D001518 3.1e-07 58.5 47 68.1
Os11g0384789 Oryza sativa ssp. japonica HOM05D000993 ORTHO05D001518 3.1e-07 58.5 47 68.1
Psat2g169960 Pisum sativum HOM05D000993 ORTHO05D001518 3.1e-07 58.5 43 72.1
Lj2g0007403 Lotus japonicus HOM05D000993 ORTHO05D001518 4.1e-07 58.2 43 72.1
MBI16_g06658_MAGBIO Magnolia biondii HOM05D000993 ORTHO05D001518 4.1e-07 58.2 47 68.1
Nitab4.5_0000604g0010 Nicotiana tabacum HOM05D000993 ORTHO05D001518 4.1e-07 58.2 47 68.1
HPP92_009533 Vanilla planifolia HOM05D000993 ORTHO05D001518 4.1e-07 58.2 47 68.1
HPP92_009548 Vanilla planifolia HOM05D000993 ORTHO05D001518 4.1e-07 58.2 47 68.1
FAN23G0567 Fragaria x ananassa HOM05D000993 ORTHO05D001518 5.4e-07 57.8 47 63.8
MD02G1181500 Malus domestica HOM05D000993 ORTHO05D001518 5.4e-07 57.8 47 66.0
Nitab4.5_0004400g0040 Nicotiana tabacum HOM05D000993 ORTHO05D001518 5.4e-07 57.8 47 68.1
TAR381G0072 Trochodendron aralioides HOM05D000993 ORTHO05D001518 5.4e-07 57.8 47 63.8
CSS0003765 Camellia sinensis var. sinensis HOM05D000993 ORTHO05D001518 7.0e-07 57.4 46 69.6
Ciclev10026274m.g Citrus clementina HOM05D000993 ORTHO05D001518 7.0e-07 57.4 47 66.0
arahy.Tifrunner.gnm1.ann1.SUGY7B Arachis hypogaea HOM05D000993 ORTHO05D001518 9.2e-07 57.0 43 72.1
CsaV3_2G016550 Cucumis sativus L. HOM05D000993 ORTHO05D001518 9.2e-07 57.0 47 66.0
Glyma.01G191200 Glycine max HOM05D000993 ORTHO05D001518 9.2e-07 57.0 43 65.1
AUR62003965 Chenopodium quinoa HOM05D000993 ORTHO05D001518 1.2e-06 56.6 46 69.6
ClCG02G012420 Citrullus lanatus HOM05D000993 ORTHO05D001518 1.2e-06 56.6 47 66.0
MELO3C020865.2 Cucumis melo HOM05D000993 ORTHO05D001518 1.2e-06 56.6 47 66.0
HanXRQChr12g0373271 Helianthus annuus HOM05D000993 ORTHO05D001518 1.2e-06 56.6 56 64.3
Nn1g04636 Nelumbo nucifera HOM05D000993 ORTHO05D001518 1.6e-06 56.2 46 65.2
PGR004G2221 Punica granatum HOM05D000993 ORTHO05D001518 1.6e-06 56.2 47 68.1
Sc11g0005530 Simmondsia chinensis HOM05D000993 ORTHO05D001518 1.6e-06 56.2 47 70.2
ATR0661G218 Amborella trichopoda HOM05D000993 ORTHO05D001518 2.0e-06 55.8 47 63.8
arahy.Tifrunner.gnm1.ann1.5148EJ Arachis hypogaea HOM05D000993 ORTHO05D001518 2.0e-06 55.8 47 68.1
arahy.Tifrunner.gnm1.ann1.JAK3I1 Arachis hypogaea HOM05D000993 ORTHO05D001518 2.0e-06 55.8 47 68.1
Dinv44981 Davidia involucrata HOM05D000993 ORTHO05D001518 2.0e-06 55.8 47 61.7
Glyma.11G051000 Glycine max HOM05D000993 ORTHO05D001518 2.0e-06 55.8 43 62.8
Oeu011610.1 Olea europaea HOM05D000993 ORTHO05D001518 2.0e-06 55.8 43 69.8
VMungo1215G0956 Vigna mungo HOM05D000993 ORTHO05D001518 2.0e-06 55.8 43 65.1
Zm00001eb020660 Zea mays HOM05D000993 ORTHO05D001518 2.0e-06 55.8 47 66.0
arahy.Tifrunner.gnm1.ann1.IP5B92 Arachis hypogaea HOM05D000993 ORTHO05D001518 2.7e-06 55.5 43 67.4
MSTRG.2840 Avicennia marina HOM05D000993 ORTHO05D001518 2.7e-06 55.5 56 62.5
DCAR_017602 Daucus carota HOM05D000993 ORTHO05D001518 2.7e-06 55.5 56 60.7
Potri.005G145000 Populus trichocarpa HOM05D000993 ORTHO05D001518 2.7e-06 55.5 47 63.8
RcHm_v2.0_Chr2g0107281 Rosa chinensis HOM05D000993 ORTHO05D001518 2.7e-06 55.5 46 65.2
vmacro17984 Vaccinium macrocarpon HOM05D000993 ORTHO05D001518 2.7e-06 55.5 56 62.5
Ah.03g146380 Amaranthus hybridus HOM05D000993 ORTHO05D001518 3.5e-06 55.1 46 69.6
EL10Ac6g15664 Beta vulgaris HOM05D000993 ORTHO05D001518 3.5e-06 55.1 46 69.6
CDE07G0148 Ceratophyllum demersum HOM05D000993 ORTHO05D001518 3.5e-06 55.1 47 61.7
Migut.L00194 Erythranthe guttata HOM05D000993 ORTHO05D001518 3.5e-06 55.1 47 61.7
Zm00001eb357430 Zea mays HOM05D000993 ORTHO05D001518 3.5e-06 55.1 47 63.8
CAN.G1075.5 Capsicum annuum HOM05D000993 ORTHO05D001518 4.5e-06 54.7 47 66.0
CARHR245870 Cardamine hirsuta HOM05D000993 ORTHO05D001518 4.5e-06 54.7 43 69.8
ClCG01G017270 Citrullus lanatus HOM05D000993 ORTHO05D001518 4.5e-06 54.7 46 67.4
MELO3C007605.2 Cucumis melo HOM05D000993 ORTHO05D001518 4.5e-06 54.7 46 63.0
CsaV3_6G043810 Cucumis sativus L. HOM05D000993 ORTHO05D001518 4.5e-06 54.7 46 63.0
Hma1.2p1_0239F.1_g099840 Hydrangea macrophylla HOM05D000993 ORTHO05D001518 4.5e-06 54.7 47 66.0
CDE04G1401 Ceratophyllum demersum HOM05D000993 ORTHO05D001518 5.9e-06 54.3 47 61.7
Haze_15323 Corylus avellana HOM05D000993 ORTHO05D001518 5.9e-06 54.3 46 65.2
Dinv30061 Davidia involucrata HOM05D000993 ORTHO05D001518 5.9e-06 54.3 46 67.4
Zm00001eb393500 Zea mays HOM05D000993 ORTHO05D001518 5.9e-06 54.3 47 63.8
MSTRG.15363 Avicennia marina HOM05D000993 ORTHO05D001518 7.8e-06 53.9 47 63.8
unitig_32.g10773 Utricularia gibba HOM05D000993 ORTHO05D001518 7.8e-06 53.9 55 61.8


User provided reference genes

Program Settings