Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 0.0e+00 1383.6 726 100.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 0.0e+00 1185.2 726 87.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 7.6e-303 1043.5 737 78.0
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 6.2e-297 1023.8 734 77.4
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.4e-296 1021.9 733 77.5
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.3e-294 1016.1 734 76.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 3.1e-288 995.0 731 75.6
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.0e-287 992.3 733 75.0
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 7.7e-271 937.2 733 70.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 7.9e-268 927.2 730 70.4
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.4e-264 916.4 674 76.1
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 5.0e-262 907.9 729 72.2
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 5.0e-262 907.9 732 70.4
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 5.0e-262 907.9 732 68.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.5e-261 905.6 732 66.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-259 899.4 732 67.9
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.3e-259 899.0 730 69.7
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.0e-256 887.5 723 68.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 4.5e-255 884.8 731 69.2
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 4.5e-255 884.8 731 69.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 7.7e-255 884.0 759 63.1
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 3.2e-253 878.6 732 67.6
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.7e-252 874.8 751 67.2
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.4e-251 873.2 684 73.0
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.6e-250 869.0 732 68.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 6.3e-249 864.4 698 69.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.0e-248 860.9 728 67.0
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.5e-245 853.2 730 67.3
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.5e-245 852.4 741 65.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.0e-243 847.0 730 67.7
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 4.4e-242 841.6 734 67.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 7.5e-242 840.9 735 66.8
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 4.8e-241 838.2 689 67.3
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.1e-240 837.0 735 66.7
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 5.9e-239 831.2 731 67.3
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.3e-238 830.1 732 65.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.1e-237 827.0 735 66.0
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 1.9e-237 826.2 729 65.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.2e-237 825.1 730 64.7
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.2e-236 823.5 684 69.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.7e-236 822.4 726 66.0
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 4.7e-236 821.6 724 66.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 2.3e-235 819.3 723 65.8
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 3.7e-233 812.0 718 66.3
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.9e-229 799.7 733 65.5
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.1e-228 796.2 697 65.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.0e-227 793.9 739 63.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 2.6e-226 789.3 734 63.2
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 4.9e-225 785.0 732 63.4
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.4e-224 783.5 849 58.1
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 5.4e-224 781.6 738 62.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 7.0e-224 781.2 736 64.4
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.0e-223 779.6 727 61.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.0e-223 779.6 696 64.5
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.5e-223 778.9 739 64.0
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.6e-222 774.6 740 61.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.3e-219 766.1 653 68.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.7e-217 760.0 739 61.6
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.7e-214 750.0 698 63.0
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 6.6e-214 748.0 713 62.1
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.3e-213 745.3 734 60.8
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 3.6e-212 742.3 734 58.9
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.1e-211 740.7 739 61.0
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 5.4e-208 728.4 612 69.3
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 7.1e-208 728.0 723 61.5
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 9.2e-208 727.6 737 59.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 6.0e-207 724.9 705 61.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 2.3e-206 723.0 741 58.8
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 5.6e-205 718.4 728 60.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 8.1e-204 714.5 512 75.2
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-203 713.8 659 64.6
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 8.9e-203 711.1 740 59.9
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.0e-202 709.9 793 53.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 5.4e-200 701.8 738 59.3
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.2e-199 700.7 723 59.9
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-198 697.2 733 59.1
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.1e-197 694.1 726 59.8
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.5e-197 693.0 728 59.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.5e-197 693.0 728 59.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 4.3e-197 692.2 732 57.7
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 7.3e-197 691.4 728 58.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.8e-195 686.8 728 57.6
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.8e-195 686.8 728 57.6
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-193 679.5 737 56.9
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 2.9e-193 679.5 737 56.9
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.1e-192 677.6 713 59.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.6e-191 672.2 515 73.2
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 3.9e-190 669.1 758 55.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 4.3e-189 665.6 601 65.9
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 4.8e-188 662.1 750 54.9
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.6e-183 647.1 727 53.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.5e-178 630.6 686 58.0
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.0e-178 630.2 725 52.1
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.6e-178 629.8 727 53.6
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.2e-176 622.9 730 51.4
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-175 620.5 660 55.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 4.6e-175 619.0 516 68.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.4e-171 606.7 670 53.9
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.9e-168 597.0 729 52.1
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.3e-166 590.9 722 53.2
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.5e-165 587.4 670 55.7
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 6.3e-164 582.0 464 66.6
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.9e-157 560.5 776 46.3
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 9.4e-152 541.6 721 49.9
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.1e-151 538.9 468 67.3
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.5e-149 534.3 712 50.4
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.3e-140 502.3 665 46.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.5e-130 469.9 507 58.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 6.1e-127 459.1 681 44.3
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.8e-126 457.6 506 57.1
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.6e-125 453.8 734 42.8
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.7e-116 423.3 665 42.7
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 8.3e-116 422.2 546 48.5
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.6e-103 380.2 739 39.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 4.1e-99 366.7 371 66.0
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 5.6e-96 356.3 532 46.8
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 7.1e-91 339.3 339 65.2
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.5e-74 283.9 372 45.2
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.9e-72 278.1 367 52.0
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.0e-70 270.4 180 87.8
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.0e-66 256.5 200 64.0
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.3e-64 250.8 331 42.3
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 9.0e-62 242.7 306 54.9
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 7.4e-56 223.0 319 42.9
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 4.9e-52 210.3 167 61.7
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.2e-51 207.6 298 39.3
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-45 188.7 351 42.7
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.9e-43 181.8 208 45.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.5e-43 181.4 281 51.6
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 5.5e-43 180.3 331 42.3
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.1e-42 178.3 103 93.2
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.0e-41 176.0 97 90.7
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.9e-41 174.1 250 56.4
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 7.2e-35 153.3 210 49.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.6e-34 151.0 276 37.3
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 4.8e-31 140.6 85 78.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.6e-26 125.6 67 88.1
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.0e-24 118.6 89 77.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 8.2e-23 113.2 120 45.8
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.3e-22 110.5 113 54.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.7e-20 105.5 329 26.7
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 5.0e-20 104.0 133 45.9
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 1.5e-19 102.4 176 35.8
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.2e-18 99.4 58 77.6
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 4.7e-18 97.4 75 61.3
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-16 92.4 86 48.8
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.5e-16 92.4 86 48.8
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 2.8e-15 88.2 51 84.3
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.3e-12 79.3 53 66.0
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.6e-10 72.4 129 34.1
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.7e-10 71.6 106 39.6
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 2.6e-08 65.1 57 66.7
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.7e-08 63.9 68 48.5
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 5.7e-08 63.9 68 48.5
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.1e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.4e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.4e-06 58.5 34 88.2


User provided reference genes

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