Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.0e-228 795.8 533 100.0
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 3.1e-197 692.2 569 86.3
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.8e-184 649.8 626 74.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 8.6e-171 604.4 624 73.9
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.5e-85 320.5 160 95.0
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 1.6e-23 115.2 153 41.8
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.0e-22 112.5 168 38.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 5.1e-22 110.2 132 43.2
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 8.7e-22 109.4 144 41.7
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.8e-20 104.4 144 39.6
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-18 98.6 149 38.3
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.0e-17 95.9 177 35.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 3.8e-17 94.0 120 40.8
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.4e-16 92.0 148 36.5
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 9.3e-16 89.4 115 41.7
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 2.7e-15 87.8 154 31.2
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.0e-14 84.3 99 42.4
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 3.0e-14 84.3 105 42.9
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.9e-13 81.6 105 41.9
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.7e-13 80.1 99 42.4
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 7.4e-13 79.7 107 38.3
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 9.7e-13 79.3 112 37.5
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.3e-12 79.0 102 39.2
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.6e-12 78.6 113 39.8
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.6e-12 78.6 144 33.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.6e-12 78.6 104 37.5
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 4.8e-12 77.0 107 40.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.2e-12 76.3 99 39.4
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.4e-11 75.5 100 41.0
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.8e-11 75.1 99 41.4
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.4e-11 74.7 156 34.0
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 4.1e-11 73.9 94 43.6
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.2e-10 72.4 94 42.6
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.5e-10 72.0 151 30.5
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.5e-10 72.0 94 42.6
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.0e-10 71.6 94 42.6
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.4e-10 70.9 111 38.7
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 4.5e-10 70.5 115 41.7
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 7.7e-10 69.7 94 40.4
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.0e-09 69.3 109 35.8
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.0e-09 69.3 109 35.8
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.3e-09 68.9 171 28.7
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.9e-09 67.8 133 36.1
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.9e-09 67.8 113 35.4
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 3.8e-09 67.4 105 33.3
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.8e-09 67.4 118 39.8
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 5.0e-09 67.0 108 37.0
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 5.0e-09 67.0 98 36.7
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 6.5e-09 66.6 98 41.8
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 6.5e-09 66.6 124 34.7
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 8.5e-09 66.2 103 38.8
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.4e-08 65.5 113 35.4
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.4e-08 65.5 137 30.7
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.9e-08 65.1 147 34.7
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.2e-08 63.9 105 34.3
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 4.2e-08 63.9 105 34.3
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 5.5e-08 63.5 112 33.0
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 5.5e-08 63.5 115 33.9
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.5e-08 63.5 118 33.1
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 7.2e-08 63.2 145 30.3
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 9.4e-08 62.8 161 32.3
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 9.4e-08 62.8 113 33.6
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 9.4e-08 62.8 140 30.0
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 9.4e-08 62.8 89 37.1
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-07 62.4 99 41.4
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.1e-07 61.6 109 34.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.1e-07 61.6 104 34.6
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 2.1e-07 61.6 141 31.2
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 2.1e-07 61.6 112 33.9
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.1e-07 61.6 101 34.7
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.7e-07 61.2 165 31.5
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 3.6e-07 60.8 161 32.9
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.6e-07 60.5 105 33.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.6e-07 60.5 122 30.3
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 6.1e-07 60.1 89 41.6
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.1e-07 60.1 112 31.2
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 6.1e-07 60.1 71 40.8
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 6.1e-07 60.1 108 34.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 7.9e-07 59.7 118 37.3
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 7.9e-07 59.7 152 30.9
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.0e-06 59.3 106 34.9
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-06 58.9 112 31.2
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.8e-06 58.5 101 34.7
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.8e-06 58.5 158 32.3
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.9e-06 57.4 107 33.6
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.1e-06 57.0 110 35.5
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 6.7e-06 56.6 116 31.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 6.7e-06 56.6 175 30.3
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 8.8e-06 56.2 144 31.2
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 8.8e-06 56.2 104 33.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 8.8e-06 56.2 144 30.6


User provided reference genes

Program Settings