Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XWVY9E Arachis hypogaea HOM05D000166 ORTHO05D005603 3.1e-133 478.4 234 100.0
arahy.Tifrunner.gnm1.ann1.E0V30Q Arachis hypogaea HOM05D000166 ORTHO05D005603 6.3e-126 454.1 227 98.7
Glyma.02G102600 Glycine max HOM05D000166 ORTHO05D005603 1.8e-88 329.7 207 77.8
Glyma.07G213900 Glycine max HOM05D000166 ORTHO05D005603 3.4e-87 325.5 207 77.3
Lalb_Chr16g0384801 Lupinus albus HOM05D000166 ORTHO05D005603 3.4e-87 325.5 203 76.4
Lj4g0011902 Lotus japonicus HOM05D000166 ORTHO05D005603 4.2e-85 318.5 194 77.3
Psat7g122920 Pisum sativum HOM05D000166 ORTHO05D005603 2.7e-84 315.8 191 79.6
Medtr4g085810 Medicago truncatula HOM05D000166 ORTHO05D005603 7.8e-84 314.3 203 76.4
VMungo0251G2354 Vigna mungo HOM05D000166 ORTHO05D005603 3.0e-83 312.4 207 74.9
Ca_18701_v3 Cicer arietinum L. HOM05D000166 ORTHO05D005603 6.6e-83 311.2 182 83.0
Lalb_Chr05g0219251 Lupinus albus HOM05D000166 ORTHO05D005603 1.1e-82 310.5 203 72.9
Manes.10G079500 Manihot esculenta HOM05D000166 ORTHO05D005603 8.1e-73 277.7 199 67.3
Prupe.8G127400 Prunus persica HOM05D000166 ORTHO05D005603 1.8e-72 276.6 200 69.5
Gohir.A12G023200 Gossypium hirsutum HOM05D000166 ORTHO05D005603 2.0e-71 273.1 199 65.8
TWI31G1190 Tripterygium wilfordii HOM05D000166 ORTHO05D005603 3.4e-71 272.3 203 65.5
Gohir.D12G023900 Gossypium hirsutum HOM05D000166 ORTHO05D005603 4.5e-71 271.9 199 65.3
MD05G1082700 Malus domestica HOM05D000166 ORTHO05D005603 5.8e-71 271.6 199 68.3
Ciclev10027951m.g Citrus clementina HOM05D000166 ORTHO05D005603 3.8e-70 268.9 199 65.8
Gorai.008G024300 Gossypium raimondii HOM05D000166 ORTHO05D005603 4.9e-70 268.5 199 64.8
Duzib052G0612 Durio zibethinus HOM05D000166 ORTHO05D005603 1.4e-69 266.9 199 63.8
FAN20G1102 Fragaria x ananassa HOM05D000166 ORTHO05D005603 1.9e-69 266.5 212 64.6
Cfa004535 Carpinus fangiana HOM05D000166 ORTHO05D005603 4.2e-69 265.4 198 62.6
FvH4_2g05840 Fragaria vesca HOM05D000166 ORTHO05D005603 1.2e-68 263.8 196 66.3
FAN27G0916 Fragaria x ananassa HOM05D000166 ORTHO05D005603 1.2e-68 263.8 212 63.7
Gohir.A13G041200 Gossypium hirsutum HOM05D000166 ORTHO05D005603 1.2e-68 263.8 199 63.8
Duzib132G0151 Durio zibethinus HOM05D000166 ORTHO05D005603 2.1e-68 263.1 199 63.3
RcHm_v2.0_Chr6g0257781 Rosa chinensis HOM05D000166 ORTHO05D005603 3.5e-68 262.3 201 64.2
Atru.chr5.2668 Acer truncatum HOM05D000166 ORTHO05D005603 4.6e-68 261.9 204 64.2
Atru.chr5.2673 Acer truncatum HOM05D000166 ORTHO05D005603 4.6e-68 261.9 204 64.2
TAR628G1133 Trochodendron aralioides HOM05D000166 ORTHO05D005603 6.0e-68 261.5 199 64.8
FAN15G2944 Fragaria x ananassa HOM05D000166 ORTHO05D005603 7.9e-68 261.2 212 63.2
Haze_10094 Corylus avellana HOM05D000166 ORTHO05D005603 1.0e-67 260.8 198 62.1
TAR376G0573 Trochodendron aralioides HOM05D000166 ORTHO05D005603 1.0e-67 260.8 200 64.5
CSS0049305 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D005603 1.8e-67 260.0 201 63.7
CiPaw.05G007700 Carya illinoinensis HOM05D000166 ORTHO05D005603 1.8e-67 260.0 192 66.1
ClCG05G010050 Citrullus lanatus HOM05D000166 ORTHO05D005603 2.3e-67 259.6 202 62.4
Actinidia00431 Actinidia chinensis HOM05D000166 ORTHO05D005603 3.0e-67 259.2 203 65.5
Gorai.013G044800 Gossypium raimondii HOM05D000166 ORTHO05D005603 3.9e-67 258.8 199 62.8
Nn1g04807 Nelumbo nucifera HOM05D000166 ORTHO05D005603 5.1e-67 258.5 183 69.9
TPR.G30951 Trifolium pratense HOM05D000166 ORTHO05D005603 5.1e-67 258.5 158 78.5
Potri.009G100400 Populus trichocarpa HOM05D000166 ORTHO05D005603 2.5e-66 256.1 198 61.6
DCAR_022017 Daucus carota HOM05D000166 ORTHO05D005603 3.3e-66 255.8 203 61.6
Sabra09G0076400 Salix brachista HOM05D000166 ORTHO05D005603 3.3e-66 255.8 203 59.6
SGA_v2.0_scaffold32G13058 Striga asiatica HOM05D000166 ORTHO05D005603 4.3e-66 255.4 185 65.9
Actinidia12939 Actinidia chinensis HOM05D000166 ORTHO05D005603 5.6e-66 255.0 201 64.7
QL11p035282 Quercus lobata HOM05D000166 ORTHO05D005603 7.4e-66 254.6 204 61.3
Dinv15727 Davidia involucrata HOM05D000166 ORTHO05D005603 1.3e-65 253.8 184 66.8
Rhsim11G0164900 Rhododendron simsii HOM05D002049 ORTHO05D005603 1.3e-65 253.8 200 63.5
Nn5g30261 Nelumbo nucifera HOM05D000166 ORTHO05D005603 1.6e-65 253.4 192 65.6
Sed0016009 Sechium edule HOM05D000166 ORTHO05D005603 2.1e-65 253.1 201 62.2
MELO3C019517.2 Cucumis melo HOM05D000166 ORTHO05D005603 4.8e-65 251.9 202 60.4
CAN.G1041.41 Capsicum annuum HOM05D000166 ORTHO05D005603 8.1e-65 251.1 205 62.0
MSTRG.16732 Avicennia marina HOM05D000166 ORTHO05D005603 1.4e-64 250.4 201 63.2
Lj9A357G67 Lonicera japonica HOM05D000166 ORTHO05D005603 1.4e-64 250.4 187 64.2
Potri.004G140301 Populus trichocarpa HOM05D000166 ORTHO05D005603 1.4e-64 250.4 202 61.4
Solyc01g108000.3 Solanum lycopersicum HOM05D000166 ORTHO05D005603 1.4e-64 250.4 207 59.9
Hma1.2p1_0370F.1_g137690 Hydrangea macrophylla HOM05D000166 ORTHO05D005603 2.4e-64 249.6 188 64.9
SalBow6G5047 Salvia bowleyana HOM05D000166 ORTHO05D005603 4.0e-64 248.8 195 62.6
Nitab4.5_0001428g0090 Nicotiana tabacum HOM05D000166 ORTHO05D005603 6.9e-64 248.1 185 64.3
CsaV3_3G018490 Cucumis sativus L. HOM05D000166 ORTHO05D005603 9.0e-64 247.7 202 59.9
Sed0012679 Sechium edule HOM05D000166 ORTHO05D005603 9.0e-64 247.7 205 60.0
vmacro02039 Vaccinium macrocarpon HOM05D000166 ORTHO05D005603 1.5e-63 246.9 204 61.3
Cc02_g18910 Coffea canephora HOM05D000166 ORTHO05D005603 1.3e-62 243.8 207 61.4
PGR042G1071 Punica granatum HOM05D000166 ORTHO05D005603 4.9e-62 241.9 197 58.9
Sopen01g050200 Solanum pennellii HOM05D000166 ORTHO05D005603 8.4e-62 241.1 184 63.0
Peaxi162Scf00016g01945 Petunia axillaris HOM05D000166 ORTHO05D005603 2.5e-61 239.6 179 66.5
CiPaw.06G171800 Carya illinoinensis HOM05D000166 ORTHO05D005603 3.2e-61 239.2 199 59.3
Migut.B00359 Erythranthe guttata HOM05D000166 ORTHO05D005603 9.3e-61 237.7 187 63.1
Aqoxy5G01205 Aquilegia oxysepala HOM05D000166 ORTHO05D005603 1.2e-60 237.3 198 58.6
PSO170G6885 Papaver somniferum HOM05D000166 ORTHO05D005603 1.6e-60 236.9 200 56.5
Sc08g0001740 Simmondsia chinensis HOM05D000166 ORTHO05D005603 1.8e-59 233.4 193 58.5
ECA236G2538 Erigeron canadensis HOM05D000166 ORTHO05D005603 3.0e-59 232.6 181 64.1
Hund00110 Selenicereus undatus HOM05D000166 ORTHO05D005603 3.0e-59 232.6 189 57.7
PSO210G5936 Papaver somniferum HOM05D000166 ORTHO05D005603 5.1e-59 231.9 196 56.6
PGSC0003DMG400025784 Solanum tuberosum HOM05D000166 ORTHO05D005603 8.7e-59 231.1 179 62.6
Aa31LG10G4320 Aethionema arabicum HOM05D000166 ORTHO05D005603 2.1e-57 226.5 183 60.1
ATR0584G288 Amborella trichopoda HOM05D000166 ORTHO05D005603 3.7e-57 225.7 185 58.4
THA.LOC104803456 Tarenaya hassleriana HOM05D000166 ORTHO05D005603 3.7e-57 225.7 200 58.0
Cpa.g.sc1524.1 Carica papaya HOM05D000166 ORTHO05D005603 4.8e-57 225.3 164 64.6
EL10Ac9g21577 Beta vulgaris HOM05D000166 ORTHO05D005603 2.4e-56 223.0 201 57.2
Sp1g36620 Schrenkiella parvula HOM05D000166 ORTHO05D005603 6.9e-56 221.5 204 54.9
Thhalv10020248m.g Eutrema salsugineum HOM05D000166 ORTHO05D005603 2.6e-55 219.5 199 54.3
Aa31LG8G6080 Aethionema arabicum HOM05D000166 ORTHO05D005603 3.4e-55 219.2 209 52.6
Sp3g17380 Schrenkiella parvula HOM05D000166 ORTHO05D005603 3.4e-55 219.2 195 54.9
HanXRQChr04g0128161 Helianthus annuus HOM05D000166 ORTHO05D005603 4.5e-55 218.8 193 57.0
CDE12G0160 Ceratophyllum demersum HOM05D000166 ORTHO05D005603 5.9e-55 218.4 190 54.2
Carub.0003s1913 Capsella rubella HOM05D000166 ORTHO05D005603 1.3e-54 217.2 201 53.2
BolC6t35572H Brassica oleracea HOM05D000166 ORTHO05D005603 1.7e-54 216.9 231 51.1
CARHR094700 Cardamine hirsuta HOM05D000166 ORTHO05D005603 2.2e-54 216.5 200 54.5
AUR62010235 Chenopodium quinoa HOM05D000166 ORTHO05D005603 5.0e-54 215.3 202 53.0
BcaC08g43158 Brassica carinata HOM05D000166 ORTHO05D005603 8.5e-54 214.5 207 52.7
C06p04410 Brassica napus HOM05D000166 ORTHO05D005603 8.5e-54 214.5 207 52.7
AUR62013220 Chenopodium quinoa HOM05D000166 ORTHO05D005603 8.5e-54 214.5 199 53.8
Nitab4.5_0003080g0040 Nicotiana tabacum HOM05D000166 ORTHO05D005603 2.5e-53 213.0 178 61.2
HanXRQChr11g0331391 Helianthus annuus HOM05D000166 ORTHO05D005603 3.2e-53 212.6 183 56.8
CARHR039770 Cardamine hirsuta HOM05D000166 ORTHO05D005603 4.2e-53 212.2 200 54.0
AT3G19300 Arabidopsis thaliana HOM05D000166 ORTHO05D005603 5.5e-53 211.8 201 52.7
A06p03740 Brassica napus HOM05D000166 ORTHO05D005603 7.2e-53 211.5 207 52.2
BraA05t21868Z Brassica rapa HOM05D000166 ORTHO05D005603 9.3e-53 211.1 207 50.7
BraA06t23579Z Brassica rapa HOM05D000166 ORTHO05D005603 1.6e-52 210.3 229 51.1
Carub.0001s3894 Capsella rubella HOM05D000166 ORTHO05D005603 1.6e-52 210.3 204 53.4
Lsat_1_v5_gn_7_86901 Lactuca sativa HOM05D000166 ORTHO05D005603 2.1e-52 209.9 181 59.1
AL3G32700 Arabidopsis lyrata HOM05D000166 ORTHO05D005603 2.7e-52 209.5 196 53.1
HPP92_003206 Vanilla planifolia HOM05D000166 ORTHO05D005603 3.6e-52 209.1 188 54.8
BcaB07g33653 Brassica carinata HOM05D000166 ORTHO05D005603 6.1e-52 208.4 192 53.6
AL1G57170 Arabidopsis lyrata HOM05D000166 ORTHO05D005603 1.0e-51 207.6 203 52.2
C05p45850 Brassica napus HOM05D000166 ORTHO05D005603 3.0e-51 206.1 200 51.0
AT1G49730 Arabidopsis thaliana HOM05D000166 ORTHO05D005603 3.9e-51 205.7 225 49.8
A05p30300 Brassica napus HOM05D000166 ORTHO05D005603 5.1e-51 205.3 200 50.5
BolC5t33303H Brassica oleracea HOM05D000166 ORTHO05D005603 1.5e-50 203.8 200 50.5
Os04g0689400 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D005603 2.8e-49 199.5 209 49.8
Zm00001eb076230 Zea mays HOM05D000166 ORTHO05D005603 3.7e-49 199.1 187 51.3
Zm00001eb082830 Zea mays HOM05D000166 ORTHO05D005603 6.3e-49 198.4 183 51.4
HPP92_009262 Vanilla planifolia HOM05D000166 ORTHO05D005603 1.4e-48 197.2 187 50.8
Gohir.D13G039900 Gossypium hirsutum HOM05D000166 ORTHO05D005603 1.5e-47 193.7 154 63.0
SEGI_03498 Sequoiadendron giganteum HOM05D000166 ORTHO05D005603 2.0e-47 193.4 179 53.6
CDE04G2834 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 1.9e-45 186.8 223 44.8
SEGI_38801 Sequoiadendron giganteum HOM05D000166 ORTHO05D005603 6.1e-44 181.8 191 49.2
CDE07G1720 Ceratophyllum demersum HOM05D000166 ORTHO05D005603 1.3e-38 164.1 160 51.9
Thhalv10011356m.g Eutrema salsugineum HOM05D000166 ORTHO05D005603 6.5e-38 161.8 154 52.6
GSVIVG01031722001 Vitis vinifera HOM05D000166 ORTHO05D005603 6.5e-38 161.8 183 48.1
Thecc.02G102400 Theobroma cacao HOM05D000166 ORTHO05D005603 1.1e-34 151.0 203 44.3
SEGI_11626 Sequoiadendron giganteum HOM05D000166 ORTHO05D005603 2.0e-34 150.2 146 50.7
Oeu013719.2 Olea europaea HOM05D000166 ORTHO05D005603 9.7e-34 147.9 201 44.3
Phvul.003G027600 Phaseolus vulgaris HOM05D000166 ORTHO05D005603 1.1e-32 144.4 83 81.9
Nn3g21336 Nelumbo nucifera HOM05D000166 ORTHO05D005603 4.1e-24 115.9 89 60.7
FAN24G0381 Fragaria x ananassa HOM05D000166 ORTHO05D005603 1.6e-20 104.0 83 60.2
Os04g0430400 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D005603 5.4e-16 89.0 76 55.3
SMO117G0165 Selaginella moellendorffii HOM05D000085 ORTHO05D005603 3.8e-14 82.8 186 29.6
AagrBONN_evm.TU.Sc2ySwM_344.4671 Anthoceros agrestis HOM05D000166 ORTHO05D005603 1.5e-13 80.9 181 27.1
Dinv42166 Davidia involucrata HOM05D000166 ORTHO05D005603 7.5e-10 68.6 40 80.0
ECA247G0886 Erigeron canadensis HOM05D000436 ORTHO05D008174 7.5e-10 68.6 59 59.3
Eucgr.G01418 Eucalyptus grandis HOM05D000166 ORTHO05D005603 1.7e-09 67.4 47 66.0


User provided reference genes

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