Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-73 280.0 145 100.0
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 7.6e-53 210.7 142 78.9
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 4.6e-50 201.4 145 75.2
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 4.7e-47 191.4 145 73.1
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-41 173.7 123 79.7
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-24 116.7 114 59.6
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.1e-23 112.8 65 87.7
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 3.7e-23 112.1 69 79.7
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 5.3e-22 108.2 63 84.1
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 9.0e-22 107.5 74 77.0
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-20 103.6 73 74.0
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 3.7e-15 85.5 98 53.1
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 1.5e-13 80.1 71 50.7
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 2.6e-13 79.3 44 88.6
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 7.7e-13 77.8 64 62.5
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.0e-12 77.4 64 59.4
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 1.0e-12 77.4 64 60.9
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.7e-12 76.6 63 54.0
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 1.7e-12 76.6 64 59.4
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 2.2e-12 76.3 64 56.2
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.9e-12 75.9 71 49.3
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 2.5e-11 72.8 64 57.8
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 3.2e-11 72.4 64 57.8
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 3.2e-11 72.4 63 50.8
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 4.2e-11 72.0 63 55.6
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 5.5e-11 71.6 63 58.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 7.2e-11 71.2 68 51.5
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 1.2e-10 70.5 63 57.1
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.2e-10 70.5 65 50.8
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 2.1e-10 69.7 63 54.0
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 2.7e-10 69.3 58 56.9
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 4.6e-10 68.6 63 49.2
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 4.6e-10 68.6 58 55.2
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 4.6e-10 68.6 58 55.2
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 4.6e-10 68.6 63 49.2
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 6.1e-10 68.2 58 55.2
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 6.1e-10 68.2 63 47.6
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 6.1e-10 68.2 63 52.4
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 6.1e-10 68.2 60 53.3
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 7.9e-10 67.8 68 47.1
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 1.4e-09 67.0 63 52.4
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 2.3e-09 66.2 64 51.6
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 2.3e-09 66.2 65 43.1
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 3.0e-09 65.9 63 42.9
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.9e-09 65.5 63 47.6
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.9e-09 65.5 65 41.5
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 5.1e-09 65.1 63 49.2
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.1e-09 65.1 58 53.4
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 5.1e-09 65.1 58 53.4
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 6.7e-09 64.7 59 52.5
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 6.7e-09 64.7 59 54.2
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 6.7e-09 64.7 63 52.4
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 6.7e-09 64.7 65 41.5
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.7e-09 64.7 65 41.5
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 6.7e-09 64.7 65 41.5
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 8.8e-09 64.3 63 47.6
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 2.0e-08 63.2 63 47.6
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 2.0e-08 63.2 63 47.6
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.3e-08 62.4 65 40.0
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 3.3e-08 62.4 58 55.2
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 3.3e-08 62.4 63 47.6
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 4.3e-08 62.0 63 46.0
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 4.3e-08 62.0 68 45.6
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 4.3e-08 62.0 63 47.6
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 4.3e-08 62.0 63 47.6
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 4.3e-08 62.0 65 44.6
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 7.4e-08 61.2 63 44.4
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 7.4e-08 61.2 63 44.4
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 7.4e-08 61.2 63 44.4
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 7.4e-08 61.2 63 44.4
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 7.4e-08 61.2 63 44.4
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 9.7e-08 60.8 58 53.4
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 9.7e-08 60.8 58 51.7
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 9.7e-08 60.8 58 53.4
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.3e-07 60.5 58 48.3
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.7e-07 60.1 141 34.8
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.7e-07 60.1 63 46.0
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.7e-07 60.1 58 50.0
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.2e-07 59.7 63 42.9
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 2.2e-07 59.7 63 42.9
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 2.2e-07 59.7 63 46.0
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 2.2e-07 59.7 64 45.3
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 3.7e-07 58.9 69 44.9
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.3e-07 58.2 58 48.3
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 6.3e-07 58.2 58 51.7
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 6.3e-07 58.2 63 46.0
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 6.3e-07 58.2 63 47.6
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.1e-06 57.4 63 49.2
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.1e-06 57.4 81 43.2
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.4e-06 57.0 58 50.0
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.4e-06 57.0 63 46.0
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 1.4e-06 57.0 58 50.0
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 1.8e-06 56.6 63 44.4
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 1.8e-06 56.6 63 47.6
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.8e-06 56.6 63 44.4
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.8e-06 56.6 60 50.0
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 2.4e-06 56.2 63 49.2
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 2.4e-06 56.2 64 40.6
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.4e-06 56.2 64 48.4
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 3.1e-06 55.8 63 44.4
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 3.1e-06 55.8 63 49.2
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 4.1e-06 55.5 58 46.6
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 5.3e-06 55.1 63 42.9
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 5.3e-06 55.1 63 44.4
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 5.3e-06 55.1 63 49.2


User provided reference genes

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