Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 2.6e-172 608.6 305 100.0
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 7.6e-172 607.1 305 99.7
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 7.6e-172 607.1 305 99.7
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 5.5e-162 574.3 305 93.4
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 7.2e-162 573.9 305 93.1
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 6.7e-160 567.4 305 93.1
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 6.3e-158 560.8 305 91.1
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.4e-157 559.7 305 90.8
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.8e-157 559.3 305 90.8
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 9.0e-157 557.0 305 86.6
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 9.0e-157 557.0 305 86.6
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.0e-156 555.8 305 86.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 3.4e-156 555.1 305 89.5
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 5.9e-156 554.3 305 89.5
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.0e-155 553.5 305 86.9
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.7e-155 552.7 305 89.5
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.9e-155 552.0 305 88.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 2.9e-155 552.0 305 87.2
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 3.8e-155 551.6 305 86.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 8.5e-155 550.4 305 88.9
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.4e-154 549.7 305 89.5
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 1.4e-154 549.7 305 86.9
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.9e-154 549.3 305 87.5
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.5e-154 548.9 305 85.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 5.5e-154 547.7 305 87.5
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 7.2e-154 547.4 305 88.5
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 4.6e-153 544.7 304 87.2
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 7.9e-153 543.9 305 83.9
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.8e-152 542.7 305 85.6
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.8e-152 542.7 301 89.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.3e-152 542.3 305 83.3
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.0e-152 542.0 305 82.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 5.1e-152 541.2 305 85.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 6.7e-152 540.8 305 82.3
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.7e-152 540.8 305 86.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 8.8e-152 540.4 305 83.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.1e-151 540.0 305 84.6
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.5e-151 539.7 305 85.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 85.9
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 83.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.6e-151 538.9 305 84.3
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 86.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 84.9
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 83.9
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 1.7e-150 536.2 305 83.0
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 85.2
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 83.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 83.9
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 4.8e-150 534.6 305 83.6
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 1.1e-149 533.5 305 83.3
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 83.6
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 83.3
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 84.9
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 84.3
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.1e-149 531.9 303 85.1
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 83.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 83.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 9.1e-149 530.4 307 81.8
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.0e-148 529.3 300 85.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.6e-148 528.9 326 80.1
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 85.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 83.0
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 4.5e-148 528.1 305 84.9
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 82.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 81.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 80.7
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 2.9e-147 525.4 301 85.7
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 80.7
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 1.1e-146 523.5 305 81.3
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 81.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 7.2e-146 520.8 305 81.0
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 80.7
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 81.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 82.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.1e-145 519.2 308 80.5
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 81.6
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.8e-144 516.2 302 83.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 80.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 80.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 3.0e-144 515.4 305 79.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 3.9e-144 515.0 305 80.3
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 3.9e-144 515.0 307 81.8
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 8.8e-144 513.8 305 79.3
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.6
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 3.3e-143 511.9 372 69.4
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 82.0
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 81.0
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.8e-142 508.8 302 79.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 4.8e-142 508.1 305 78.7
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.1e-141 505.0 304 80.3
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 2.0e-140 502.7 303 77.2
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.5e-140 501.5 330 73.9
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.0e-139 500.4 307 76.2
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 77.0
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.1e-138 496.9 307 75.9
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.1e-138 496.9 307 75.6
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 2.5e-138 495.7 303 80.2
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 3.2e-138 495.4 307 76.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 7.2e-138 494.2 307 76.2
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 9.4e-138 493.8 306 75.5
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 9.4e-138 493.8 306 75.5
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 9.4e-138 493.8 306 75.5
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.6e-137 493.0 305 75.7
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.1e-137 492.7 306 75.5
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.2e-135 486.9 388 65.5
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.2e-135 486.9 304 78.0
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.2e-135 486.9 304 78.0
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.5e-135 486.5 305 79.3
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 5.7e-135 484.6 304 77.3
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.2e-134 482.6 304 77.3
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 4.5e-124 448.4 300 71.3
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 6.5e-123 444.5 304 69.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 7.2e-122 441.0 306 68.6
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.5e-119 433.3 304 67.1
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 9.2e-117 424.1 305 70.8
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.7e-116 421.0 258 81.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.3e-112 409.5 302 64.2
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 2.2e-110 402.9 235 83.8
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 7.0e-109 397.9 303 63.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 8.3e-102 374.4 225 78.2
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 3.2e-101 372.5 225 81.8
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.7e-100 369.4 310 59.4
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 4.7e-97 358.6 228 80.3
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 2.1e-92 343.2 207 77.8
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 9.9e-71 271.2 160 80.0
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 9.9e-71 271.2 181 72.4
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 2.3e-67 260.0 143 86.0
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.9e-66 256.9 149 79.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.7e-60 236.5 154 70.8
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.8e-59 233.8 153 70.6
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 3.1e-56 223.0 300 48.0
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.8e-40 170.6 80 96.2
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 3.1e-40 169.9 139 58.3
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.5e-39 166.0 125 62.4
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 7.7e-39 165.2 80 91.2
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 7.7e-39 165.2 83 88.0
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.0e-38 164.9 85 88.2
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.9e-38 163.3 299 34.8
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 3.8e-38 162.9 205 47.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 3.8e-38 162.9 306 35.3
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 5.0e-38 162.5 79 92.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.5e-31 139.4 79 82.3
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 7.4e-26 122.1 82 68.3
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.4e-24 117.9 58 91.4
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 5.0e-22 109.4 64 79.7
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 2.5e-21 107.1 60 81.7
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 5.5e-21 105.9 296 33.1
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-18 98.2 74 78.4
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.2e-15 88.2 248 29.0


User provided reference genes

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