Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 2.4e-79 298.9 163 100.0
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 2.3e-26 122.9 72 94.4
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 3.0e-26 122.5 72 94.4
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 5.2e-26 121.7 72 94.4
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 5.2e-26 121.7 72 94.4
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 7.5e-25 117.9 72 91.7
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.8e-24 115.9 72 91.7
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.4e-23 113.6 72 88.9
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 5.6e-20 101.7 67 86.6
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 3.6e-19 99.0 72 73.6
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 1.4e-18 97.1 70 77.1
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 3.1e-18 95.9 67 80.6
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 4.0e-18 95.5 72 75.0
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 5.2e-18 95.1 72 76.4
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 8.9e-18 94.4 72 73.6
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 8.9e-18 94.4 72 75.0
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 8.9e-18 94.4 72 76.4
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 4.9e-16 88.6 71 67.6
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 1.9e-15 86.7 72 69.4
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 3.2e-15 85.9 72 69.4
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 7.0e-15 84.7 74 64.9
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 9.2e-15 84.3 72 68.1
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 9.2e-15 84.3 72 66.7
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.0e-14 83.2 73 64.4
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.0e-14 83.2 73 64.4
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 3.5e-14 82.4 74 67.6
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 3.5e-14 82.4 70 64.3
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 4.6e-14 82.0 72 63.9
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 4.6e-14 82.0 76 63.2
arahy.Tifrunner.gnm1.ann1.1QTR5T Arachis hypogaea HOM05D003289 ORTHO05D084552 7.8e-14 81.3 47 89.4
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 7.8e-14 81.3 72 63.9
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 1.3e-13 80.5 73 61.6
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 1.3e-13 80.5 73 63.0
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 1.3e-13 80.5 72 63.9
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.7e-13 80.1 72 66.7
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 1.7e-13 80.1 72 65.3
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 3.0e-13 79.3 94 53.2
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 3.0e-13 79.3 76 60.5
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 5.0e-13 78.6 72 65.3
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 5.0e-13 78.6 72 65.3
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 5.0e-13 78.6 73 63.0
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 5.0e-13 78.6 73 63.0
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 8.6e-13 77.8 72 63.9
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 8.6e-13 77.8 72 63.9
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 1.1e-12 77.4 77 61.0
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 1.5e-12 77.0 76 60.5
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.9e-12 76.6 72 63.9
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.9e-12 76.6 72 63.9
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 1.9e-12 76.6 74 59.5
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 1.9e-12 76.6 72 61.1
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 4.3e-12 75.5 73 61.6
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 4.3e-12 75.5 76 63.2
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 4.3e-12 75.5 72 61.1
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 4.3e-12 75.5 77 62.3
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 5.6e-12 75.1 73 60.3
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.6e-11 73.6 75 61.3
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 1.6e-11 73.6 71 60.6
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 2.1e-11 73.2 74 62.2
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 2.8e-11 72.8 73 57.5
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 6.2e-11 71.6 75 61.3
arahy.Tifrunner.gnm1.ann1.B0S4UE Arachis hypogaea HOM05D003289 ORTHO05D083771 8.0e-11 71.2 46 84.8
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 8.0e-11 71.2 75 57.3
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 1.1e-10 70.9 72 61.1
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 1.1e-10 70.9 46 82.6
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 1.1e-10 70.9 73 60.3
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 2.3e-10 69.7 53 67.9
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 2.3e-10 69.7 86 51.2
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 4.0e-10 68.9 72 56.9
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 4.0e-10 68.9 72 56.9
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 6.8e-10 68.2 77 53.2
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 8.9e-10 67.8 73 58.9
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 1.2e-09 67.4 76 50.0
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 1.2e-09 67.4 77 57.1
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.5e-09 67.0 64 64.1
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 2.6e-09 66.2 72 55.6
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 3.4e-09 65.9 73 54.8
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 3.4e-09 65.9 72 55.6
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 4.4e-09 65.5 51 70.6
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 4.4e-09 65.5 43 81.4
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 5.8e-09 65.1 47 74.5
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 5.8e-09 65.1 47 74.5
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 5.8e-09 65.1 47 74.5
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 5.8e-09 65.1 43 83.7
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 5.8e-09 65.1 77 54.5
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 1.3e-08 63.9 51 68.6
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 1.3e-08 63.9 51 68.6
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 1.7e-08 63.5 51 66.7
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 2.9e-08 62.8 47 70.2
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 2.9e-08 62.8 74 52.7
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 3.7e-08 62.4 75 53.3
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 6.4e-08 61.6 79 51.9
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 6.4e-08 61.6 47 72.3
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 6.4e-08 61.6 44 75.0
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 6.4e-08 61.6 74 52.7
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 8.3e-08 61.2 74 54.1
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 8.3e-08 61.2 72 54.2
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 1.1e-07 60.8 67 56.7
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 1.1e-07 60.8 72 48.6
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 1.4e-07 60.5 51 66.7
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 1.4e-07 60.5 73 50.7
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 1.9e-07 60.1 44 75.0
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 3.2e-07 59.3 73 52.1
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 4.1e-07 58.9 53 66.0
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 9.2e-07 57.8 76 50.0
VMungo0647G1967 Vigna mungo HOM05D006376 ORTHO05D008046 9.2e-07 57.8 47 70.2
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.2e-06 57.4 55 56.4
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 1.6e-06 57.0 54 66.7
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 6.0e-06 55.1 48 68.8


User provided reference genes

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