Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2747.6 1388 100.0
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2738.0 1388 99.6
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2639.4 1388 95.2
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2612.0 1389 94.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2598.5 1388 94.1
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2594.3 1388 93.8
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2588.9 1388 93.4
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2582.7 1388 92.7
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2575.8 1388 92.9
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2565.4 1388 92.4
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2561.6 1388 92.4
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2560.4 1388 92.3
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2558.9 1388 92.5
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2552.7 1388 92.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2550.4 1386 91.4
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2548.9 1389 92.2
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2547.7 1391 91.5
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2545.8 1388 91.1
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2545.0 1388 91.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2544.6 1388 91.3
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1386 91.5
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1388 91.5
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2541.5 1388 91.1
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2541.1 1388 90.8
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2539.6 1388 91.5
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2539.2 1388 91.3
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2538.5 1389 91.0
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2538.5 1388 91.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2535.4 1388 91.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1388 91.4
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1388 90.9
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2530.4 1388 91.3
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2529.2 1388 90.9
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2528.1 1388 90.5
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2525.4 1403 90.0
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2522.7 1388 91.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2522.7 1388 90.3
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2516.9 1388 90.6
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2516.9 1388 90.4
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2516.1 1388 90.2
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1390 90.3
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1388 91.1
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1402 89.7
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2512.3 1388 90.5
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1388 89.8
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1388 89.8
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2499.9 1388 89.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2499.2 1388 89.8
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2496.5 1388 89.8
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2488.0 1399 88.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1388 88.9
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1388 89.3
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2486.4 1388 89.1
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2486.1 1388 89.2
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2486.1 1388 88.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1388 88.8
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1388 89.5
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2484.1 1388 89.1
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1388 89.1
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1388 89.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2481.4 1388 89.0
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2481.4 1388 89.0
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2480.3 1388 89.2
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2479.9 1388 88.6
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1388 89.2
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1389 88.0
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2478.7 1388 89.1
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2474.1 1388 88.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2471.4 1415 87.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2456.4 1388 87.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2451.4 1449 84.3
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2449.1 1388 87.5
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1388 87.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2446.4 1390 87.6
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2442.2 1339 90.7
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2439.8 1388 88.0
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2434.4 1387 87.5
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2429.8 1388 87.0
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2427.9 1389 87.8
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2424.8 1388 86.7
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2421.0 1388 86.5
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2420.6 1359 88.2
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2417.5 1388 86.7
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2413.6 1388 87.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2413.6 1388 86.5
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2412.1 1388 86.5
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2405.6 1389 86.4
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2405.6 1389 86.4
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2400.5 1388 86.2
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2400.5 1388 86.2
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2400.5 1388 86.2
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2391.3 1389 86.0
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2376.7 1389 85.2
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2367.0 1388 85.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2363.2 1388 85.5
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2361.3 1358 85.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2346.6 1413 84.1
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2312.0 1263 92.0
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2309.3 1264 91.1
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2306.9 1335 84.6
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2283.1 1350 85.4
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2242.2 1268 89.0
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2211.8 1336 81.5
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2200.6 1355 79.4
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1343 79.9
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2184.1 1347 80.0
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2184.1 1347 80.0
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2171.4 1373 77.7
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1998.8 1386 75.8
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1992.2 1125 88.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1975.3 1113 88.5
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1927.1 1406 73.9
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1894.0 1338 69.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1871.7 1339 69.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1713.4 913 92.7
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1704.1 1388 66.5
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1644.0 898 90.9
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1514.6 808 92.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1514.6 809 92.5
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1170.6 690 85.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1105.5 679 82.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.3e-303 1047.0 571 88.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 5.5e-302 1041.6 673 79.5
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 5.2e-268 928.7 592 80.7
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 6.4e-266 921.8 1202 44.1
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.6e-237 827.4 476 87.6
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 2.4e-236 823.5 476 87.6
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 9.0e-236 821.6 476 86.8
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.5e-217 760.4 476 80.9
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.3e-207 728.0 398 88.9
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 3.6e-176 623.6 1379 32.9
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.6e-160 571.6 1487 30.2
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 1.8e-111 408.7 1281 28.3
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 2.1e-91 342.0 175 96.6
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 3.6e-67 261.5 147 84.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 2.9e-61 241.9 123 95.1
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 8.3e-48 197.2 107 92.5
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.9e-44 186.0 175 59.4
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.2e-31 142.1 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 5.6e-28 131.3 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.1e-26 127.1 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.6e-19 103.2 60 83.3


User provided reference genes

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