Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 9.3e-136 486.9 246 100.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.3e-40 169.5 78 100.0
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 4.7e-39 165.6 78 98.7
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 1.7e-33 147.1 67 100.0
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 3.0e-33 146.4 69 94.2
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 5.6e-32 142.1 66 95.5
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 9.6e-32 141.4 85 74.1
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 1.2e-31 141.0 66 93.9
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.2e-31 141.0 74 83.8
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 1.6e-31 140.6 72 84.7
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 2.1e-31 140.2 68 89.7
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 2.1e-31 140.2 66 93.9
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.8e-31 139.8 66 93.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 2.8e-31 139.8 66 93.9
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 3.6e-31 139.4 78 78.2
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 3.6e-31 139.4 66 92.4
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 3.6e-31 139.4 66 92.4
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 3.6e-31 139.4 66 92.4
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.1e-31 138.3 67 91.0
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 8.1e-31 138.3 67 91.0
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 8.1e-31 138.3 66 92.4
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 1.1e-30 137.9 66 89.4
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 1.1e-30 137.9 66 90.9
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 1.1e-30 137.9 66 90.9
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.4e-30 137.5 88 71.6
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.8e-30 137.1 75 81.3
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 1.8e-30 137.1 66 89.4
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 1.8e-30 137.1 66 89.4
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.8e-30 137.1 66 89.4
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.8e-30 137.1 66 93.9
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 1.8e-30 137.1 66 90.9
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.8e-30 137.1 66 89.4
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 2.4e-30 136.7 75 80.0
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.4e-30 136.7 66 90.9
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 3.1e-30 136.3 66 92.4
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 3.1e-30 136.3 68 88.2
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 3.1e-30 136.3 66 89.4
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 4.0e-30 136.0 69 87.0
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 5.2e-30 135.6 66 87.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 5.2e-30 135.6 77 76.6
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.2e-30 135.6 66 87.9
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.2e-30 135.6 66 87.9
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 5.2e-30 135.6 66 87.9
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 5.2e-30 135.6 66 89.4
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 5.2e-30 135.6 75 82.7
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 6.9e-30 135.2 66 86.4
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 6.9e-30 135.2 75 78.7
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 6.9e-30 135.2 75 78.7
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 6.9e-30 135.2 66 87.9
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 6.9e-30 135.2 66 89.4
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 6.9e-30 135.2 66 89.4
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.2e-29 134.4 68 88.2
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.2e-29 134.4 66 90.9
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.5e-29 134.0 89 69.7
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.5e-29 134.0 66 89.4
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 1.5e-29 134.0 88 68.2
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 2.0e-29 133.7 75 77.3
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 2.0e-29 133.7 75 77.3
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 2.0e-29 133.7 66 87.9
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.6e-29 133.3 68 83.8
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 2.6e-29 133.3 66 86.4
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 3.4e-29 132.9 66 89.4
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 4.4e-29 132.5 66 86.4
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 4.4e-29 132.5 72 79.2
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 4.4e-29 132.5 76 76.3
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 4.4e-29 132.5 66 87.9
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 4.4e-29 132.5 66 87.9
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 4.4e-29 132.5 66 86.4
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 4.4e-29 132.5 66 87.9
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 5.8e-29 132.1 66 86.4
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 5.8e-29 132.1 66 86.4
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 5.8e-29 132.1 66 86.4
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 5.8e-29 132.1 66 86.4
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 5.8e-29 132.1 66 87.9
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 5.8e-29 132.1 66 86.4
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 7.6e-29 131.7 66 87.9
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 9.9e-29 131.3 86 69.8
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 9.9e-29 131.3 69 82.6
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 9.9e-29 131.3 75 76.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.3e-28 131.0 74 81.1
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.3e-28 131.0 66 87.9
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.3e-28 131.0 66 87.9
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.7e-28 130.6 86 69.8
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.7e-28 130.6 66 86.4
arahy.Tifrunner.gnm1.ann1.2UKF0F Arachis hypogaea HOM05D025757 ORTHO05D083154 2.2e-28 130.2 85 80.0
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 2.2e-28 130.2 69 82.6
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.9e-28 129.8 66 84.8
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.9e-28 129.8 66 84.8
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 3.8e-28 129.4 66 84.8
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 3.8e-28 129.4 66 86.4
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 4.9e-28 129.0 65 87.7
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 6.4e-28 128.6 66 83.3
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 6.4e-28 128.6 66 84.8
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 6.4e-28 128.6 66 87.9
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 6.4e-28 128.6 66 86.4
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 8.4e-28 128.3 66 84.8
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 8.4e-28 128.3 66 84.8
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 8.4e-28 128.3 66 86.4
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 8.4e-28 128.3 66 86.4
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 1.1e-27 127.9 66 83.3
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.4e-27 127.5 72 80.6
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.4e-27 127.5 66 83.3
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.9e-27 127.1 88 68.2
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.9e-27 127.1 88 68.2
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.9e-27 127.1 88 68.2
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.9e-27 127.1 66 83.3
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.9e-27 127.1 67 80.6
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.9e-27 127.1 67 80.6
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.9e-27 127.1 66 83.3
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 2.4e-27 126.7 66 81.8
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 3.2e-27 126.3 86 68.6
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 4.2e-27 125.9 66 81.8
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 4.2e-27 125.9 66 83.3
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 9.3e-27 124.8 66 83.3
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.2e-26 124.4 66 83.3
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 1.2e-26 124.4 66 83.3
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 1.6e-26 124.0 66 83.3
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 2.7e-26 123.2 66 83.3
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 4.6e-26 122.5 67 77.6
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 6.0e-26 122.1 66 81.8
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 7.8e-26 121.7 65 81.5
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 1.7e-25 120.6 65 80.0
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 2.3e-25 120.2 66 81.8
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 1.1e-24 117.9 68 75.0
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.5e-24 116.7 64 79.7
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.8e-22 110.5 66 75.8
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 9.0e-22 108.2 78 59.0
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.2e-21 107.8 93 55.9
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 7.4e-16 88.6 65 61.5
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 9.6e-16 88.2 77 58.4
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 3.1e-14 83.2 53 64.2
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 7.6e-13 78.6 56 60.7
arahy.Tifrunner.gnm1.ann1.5LH2SM Arachis hypogaea HOM05D025757 ORTHO05D082812 9.9e-13 78.2 100 53.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 4.9e-12 75.9 49 61.2
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 2.1e-10 70.5 50 68.0
arahy.Tifrunner.gnm1.ann1.IWNG5E Arachis hypogaea HOM05D025757 ORTHO05D083434 6.0e-10 68.9 94 51.1
arahy.Tifrunner.gnm1.ann1.JRXR5K Arachis hypogaea HOM05D003754 ORTHO05D004530 4.0e-06 56.2 57 59.6
FAN02G4440 Fragaria x ananassa HOM05D012050 ORTHO05D011158 5.3e-06 55.8 31 74.2


User provided reference genes

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