Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 3.1e-103 378.6 215 100.0
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 7.7e-102 374.0 215 99.1
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 1.5e-84 316.6 211 87.7
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 3.6e-83 312.0 211 84.4
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 8.0e-83 310.8 207 86.5
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 2.3e-82 309.3 211 76.3
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 6.7e-82 307.8 211 76.3
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 3.3e-81 305.4 211 83.9
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 2.4e-79 299.3 201 85.6
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 2.4e-79 299.3 211 82.0
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 1.0e-77 293.9 207 81.6
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 1.3e-77 293.5 211 82.5
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 1.1e-76 290.4 209 79.4
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 1.9e-76 289.7 207 79.7
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.5e-76 289.3 209 79.4
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.5e-76 289.3 209 79.4
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.5e-76 289.3 211 76.3
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 3.2e-76 288.9 209 78.9
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 9.4e-76 287.3 209 78.9
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 4.7e-75 285.0 207 69.1
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 8.0e-75 284.3 209 76.6
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 8.0e-75 284.3 213 75.6
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 1.0e-74 283.9 213 66.2
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 1.0e-74 283.9 209 75.6
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 1.8e-74 283.1 209 78.0
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 1.8e-74 283.1 207 78.7
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 4.0e-74 282.0 209 78.0
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 4.0e-74 282.0 213 74.2
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 1.2e-73 280.4 207 76.3
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.0e-73 279.6 209 75.6
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.6e-73 279.3 213 72.3
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 4.4e-73 278.5 211 74.4
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 9.8e-73 277.3 209 75.1
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 9.8e-73 277.3 209 75.1
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 1.7e-72 276.6 207 76.8
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 1.7e-72 276.6 209 69.4
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.2e-72 276.2 207 75.8
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 4.8e-72 275.0 209 73.2
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 6.3e-72 274.6 207 67.1
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 8.3e-72 274.2 209 74.6
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 8.3e-72 274.2 209 74.6
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 1.1e-71 273.9 209 75.6
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 4.1e-71 271.9 206 73.8
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 5.4e-71 271.6 213 73.2
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 7.0e-71 271.2 205 76.6
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 9.1e-71 270.8 207 66.2
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 1.2e-70 270.4 209 65.1
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 2.0e-70 269.6 207 72.9
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.0e-70 269.6 209 68.4
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 2.0e-70 269.6 209 68.4
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 2.0e-70 269.6 207 73.4
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.7e-70 269.2 218 70.6
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 4.5e-70 268.5 211 64.0
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 1.0e-69 267.3 212 74.5
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.3e-69 266.9 213 62.0
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.7e-69 266.5 207 72.5
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 1.7e-69 266.5 207 74.4
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 2.2e-69 266.2 208 72.6
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 5.0e-69 265.0 209 63.6
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 6.5e-69 264.6 168 75.6
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 6.5e-69 264.6 166 72.9
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 8.5e-69 264.2 213 71.8
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 1.1e-68 263.8 208 70.2
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.1e-68 263.8 207 72.5
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.5e-68 263.5 207 63.8
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 1.5e-68 263.5 209 69.4
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 1.9e-68 263.1 207 75.4
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 2.5e-68 262.7 209 74.2
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 3.2e-68 262.3 204 75.0
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 5.5e-68 261.5 204 74.5
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 5.5e-68 261.5 204 74.5
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 9.4e-68 260.8 204 74.5
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 9.4e-68 260.8 213 63.4
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 9.4e-68 260.8 209 62.7
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 4.7e-67 258.5 207 72.0
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 4.7e-67 258.5 207 71.5
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 8.0e-67 257.7 207 72.0
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 8.0e-67 257.7 207 71.5
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 8.0e-67 257.7 207 71.5
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 8.0e-67 257.7 207 71.5
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 1.0e-66 257.3 213 66.2
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 1.0e-66 257.3 190 77.9
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 1.4e-66 256.9 207 61.4
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 1.4e-66 256.9 207 72.0
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.4e-66 256.9 213 69.0
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 1.8e-66 256.5 213 72.3
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 1.8e-66 256.5 207 72.0
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 1.8e-66 256.5 207 71.5
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 2.3e-66 256.1 207 71.5
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 2.3e-66 256.1 212 60.4
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 3.0e-66 255.8 207 71.0
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 5.2e-66 255.0 209 71.3
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 5.2e-66 255.0 207 71.5
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 5.2e-66 255.0 207 60.9
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 5.2e-66 255.0 210 69.5
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 6.8e-66 254.6 215 59.5
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 8.8e-66 254.2 207 72.9
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 5.7e-65 251.5 209 68.9
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 2.8e-64 249.2 209 68.9
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 8.3e-64 247.7 260 52.3
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 1.7e-61 240.0 213 65.7
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 6.6e-61 238.0 212 57.1
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 7.3e-60 234.6 184 74.5
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 2.8e-59 232.6 207 66.7
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 1.8e-58 229.9 209 56.0
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 1.7e-56 223.4 207 55.6
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 1.1e-55 220.7 204 60.3
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 4.7e-51 205.3 198 57.1
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 8.0e-51 204.5 207 54.6
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 6.4e-48 194.9 213 62.0
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 6.4e-48 194.9 170 57.6
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 1.2e-46 190.7 163 55.2
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 1.3e-45 187.2 169 53.3
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 8.6e-45 184.5 166 56.6
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 2.1e-38 163.3 213 54.9
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 8.6e-37 157.9 169 47.3
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 2.0e-33 146.7 135 53.3
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 4.4e-33 145.6 96 75.0
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.8e-18 97.1 83 57.8
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 9.3e-15 84.7 86 73.3
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 7.4e-12 75.1 43 79.1
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 2.2e-08 63.5 94 38.3
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 8.4e-08 61.6 157 31.2
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 1.1e-07 61.2 150 30.0
Thhalv10023830m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 2.4e-07 60.1 155 30.3
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 2.4e-07 60.1 165 30.3
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 4.2e-07 59.3 165 29.7
RcHm_v2.0_Chr2g0103761 Rosa chinensis HOM05D000710 ORTHO05D000336 4.2e-07 59.3 164 30.5
Carub.0006s3341 Capsella rubella HOM05D000710 ORTHO05D000336 7.1e-07 58.5 161 31.1
Thhalv10009631m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 1.2e-06 57.8 150 29.3
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.6e-06 57.4 120 34.2
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-06 57.4 82 41.5
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.6e-06 57.4 120 34.2
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 2.1e-06 57.0 81 40.7
Nitab4.5_0003553g0050 Nicotiana tabacum HOM05D002629 ORTHO05D003221 2.1e-06 57.0 168 32.1
Nitab4.5_0003696g0020 Nicotiana tabacum HOM05D002629 ORTHO05D003221 2.1e-06 57.0 168 32.1
Thhalv10029272m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 2.7e-06 56.6 161 29.8
SEGI_17775 Sequoiadendron giganteum HOM05D005998 ORTHO05D007664 2.7e-06 56.6 176 29.5


User provided reference genes

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