Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.0e-191 673.3 357 100.0
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.5e-174 616.3 363 92.0
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 7.3e-57 225.3 388 43.0
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.3e-55 220.3 419 40.1
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.7e-53 214.2 443 38.1
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 9.0e-47 191.8 419 39.1
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 1.5e-46 191.0 429 38.7
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 9.9e-46 188.3 411 39.2
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 7.3e-41 172.2 358 38.0
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 2.0e-38 164.1 362 35.6
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.3e-37 161.4 244 44.7
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 6.4e-37 159.1 461 31.5
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 2.7e-35 153.7 460 32.0
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.6e-32 144.4 414 34.8
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 2.8e-32 143.7 456 32.9
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 4.0e-31 139.8 377 34.2
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 4.5e-30 136.3 408 31.9
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 2.2e-29 134.0 438 29.9
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 7.1e-28 129.0 469 30.5
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.6e-27 127.9 423 32.6
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.3e-26 124.8 349 34.4
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 8.7e-26 122.1 449 29.4
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.5e-25 121.3 447 29.8
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.5e-25 120.6 427 30.7
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 7.4e-25 119.0 439 28.2
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.6e-24 117.9 449 29.2
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 2.8e-24 117.1 467 31.0
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 4.8e-24 116.3 434 28.8
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.1e-23 115.2 435 27.4
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 3.1e-23 113.6 440 28.9
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.2e-22 111.7 380 30.3
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 1.5e-22 111.3 396 30.8
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.0e-22 110.9 447 28.4
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 3.4e-22 110.2 390 31.0
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 3.4e-22 110.2 434 29.0
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 2.2e-21 107.5 371 31.8
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 3.8e-21 106.7 417 28.3
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.4e-20 104.8 398 30.4
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 9.3e-20 102.1 340 32.1
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.2e-19 101.7 377 31.0
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.6e-19 101.3 436 25.7
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.7e-18 95.9 401 26.2
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-17 95.1 367 28.6
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.5e-17 94.7 410 29.5
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 2.5e-17 94.0 414 30.7
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.3e-16 91.7 367 28.9
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 1.6e-16 91.3 367 28.9
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.1e-15 88.6 385 29.6
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.1e-15 88.6 437 25.2
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 5.3e-15 86.3 403 28.3
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 9.0e-15 85.5 367 26.2
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 9.0e-15 85.5 378 27.8
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.5e-14 84.7 407 26.8
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 2.0e-14 84.3 391 26.6
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.0e-14 84.3 398 25.9
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 2.6e-14 84.0 388 27.6
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.7e-13 81.3 411 27.3
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.9e-13 80.5 406 27.8
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 5.0e-13 79.7 383 27.4
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 1.1e-12 78.6 375 28.5
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.9e-12 77.8 407 26.5
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.9e-12 77.8 461 28.4
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 5.5e-12 76.3 345 29.0
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 7.2e-12 75.9 153 38.6
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.2e-12 75.9 379 25.6
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 9.3e-12 75.5 404 25.2
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.6e-11 74.7 192 31.8
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.7e-11 73.9 429 26.6
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 6.1e-11 72.8 440 25.5
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.3e-10 70.9 408 23.5
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.9e-10 70.1 375 23.5
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 7.4e-09 65.9 355 25.6
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 9.7e-09 65.5 399 25.6
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.7e-08 64.7 377 26.0
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.2e-08 64.3 426 25.1
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.2e-08 64.3 418 25.4
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 3.7e-08 63.5 432 26.4
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 6.3e-08 62.8 440 23.6
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.8e-07 61.2 405 23.2
HanXRQChr05g0135801 Helianthus annuus HOM05D003726 ORTHO05D003520 4.1e-07 60.1 217 26.7
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 5.3e-07 59.7 349 24.9
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 5.3e-07 59.7 143 37.1
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 9.1e-07 58.9 370 23.2
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 3.4e-06 57.0 167 33.5
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 7.7e-06 55.8 276 25.4
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.7e-06 55.8 156 30.1


User provided reference genes

Program Settings