Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 4.7e-191 671.0 331 100.0
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 2.5e-176 622.1 331 94.3
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 1.4e-163 579.7 331 83.4
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 2.0e-162 575.9 331 83.1
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 2.0e-162 575.9 331 83.4
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 2.0e-162 575.9 331 82.8
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 7.8e-162 573.9 331 83.4
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 6.6e-161 570.9 329 82.7
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 8.6e-161 570.5 329 82.7
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.9e-160 569.3 330 83.3
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 1.9e-160 569.3 331 82.5
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 7.3e-160 567.4 331 81.9
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 8.0e-159 563.9 330 81.2
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 1.4e-158 563.1 330 81.5
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 4.0e-158 561.6 329 81.8
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 2.6e-157 558.9 331 81.3
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 5.8e-157 557.8 330 80.3
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 1.3e-156 556.6 330 78.8
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 1.3e-156 556.6 329 79.6
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.3e-156 556.6 329 80.5
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.7e-156 556.2 329 80.2
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 2.2e-156 555.8 330 79.7
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 3.7e-156 555.1 327 80.4
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 4.9e-156 554.7 329 79.3
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 4.9e-156 554.7 329 79.6
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 4.9e-156 554.7 329 79.6
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 4.9e-156 554.7 328 81.4
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.4e-155 553.1 330 80.3
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.9e-155 552.7 330 79.7
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 2.4e-155 552.4 330 80.0
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 2.4e-155 552.4 330 79.7
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 4.1e-155 551.6 330 79.4
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.4e-155 551.2 330 79.7
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 9.2e-155 550.4 330 77.9
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 9.2e-155 550.4 327 79.8
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.2e-154 550.1 329 78.7
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 1.2e-154 550.1 331 80.7
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 2.7e-154 548.9 330 78.2
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 4.6e-154 548.1 329 80.5
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 6.0e-154 547.7 330 80.0
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 7.8e-154 547.4 329 78.1
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.0e-153 547.0 330 79.4
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 1.3e-153 546.6 327 79.8
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 2.3e-153 545.8 329 78.4
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 6.6e-153 544.3 327 79.5
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.5e-152 543.1 329 78.7
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 1.9e-152 542.7 330 78.8
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 3.3e-152 542.0 327 78.0
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 4.3e-152 541.6 329 76.9
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 5.6e-152 541.2 330 78.2
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 5.6e-152 541.2 328 80.8
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 7.3e-152 540.8 332 79.5
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 7.3e-152 540.8 330 78.2
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 9.5e-152 540.4 329 78.4
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.2e-151 540.0 327 79.2
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 1.2e-151 540.0 331 78.2
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 2.8e-151 538.9 330 77.0
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.6e-151 538.5 327 78.9
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 8.1e-151 537.3 330 77.9
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 8.1e-151 537.3 330 77.9
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.1e-150 537.0 329 77.8
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 1.8e-150 536.2 329 77.2
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 2.3e-150 535.8 327 77.4
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.1e-150 535.4 330 77.9
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 5.2e-150 534.6 330 78.2
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 6.8e-150 534.3 329 77.8
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 6.8e-150 534.3 329 77.8
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.2e-149 533.5 330 77.3
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.2e-149 533.5 330 77.6
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.5e-149 533.1 344 75.3
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 1.5e-149 533.1 329 77.8
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 2.0e-149 532.7 329 78.1
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 2.0e-149 532.7 329 78.1
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 2.6e-149 532.3 329 78.1
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 2.6e-149 532.3 329 77.5
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 4.4e-149 531.6 329 77.2
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 7.5e-149 530.8 329 77.8
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 1.7e-148 529.6 330 76.4
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.7e-148 529.6 329 77.8
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 2.9e-148 528.9 326 76.4
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 3.7e-148 528.5 313 80.5
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 4.9e-148 528.1 329 76.0
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 6.0e-146 521.2 330 76.4
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 6.0e-146 521.2 330 77.3
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 1.7e-145 519.6 402 65.7
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 6.6e-145 517.7 330 74.5
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 3.6e-143 511.9 360 69.7
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 4.7e-143 511.5 360 69.4
Cpa.g.sc42.29 Carica papaya HOM05D004164 ORTHO05D004891 1.2e-138 496.9 348 70.7
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 4.6e-138 495.0 330 71.5
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 5.1e-137 491.5 317 74.8
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.4e-134 483.4 327 71.6
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 1.3e-129 466.8 329 69.3
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 3.9e-129 465.3 330 67.9
FvH4_5g07040 Fragaria vesca HOM05D004164 ORTHO05D004891 7.1e-123 444.5 285 74.7
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 2.4e-118 429.5 330 64.8
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 2.9e-116 422.5 353 62.0
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.9e-115 419.9 344 64.0
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 3.2e-115 419.1 331 61.9
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 1.2e-114 417.2 331 61.0
MBI02_g02171_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 1.8e-113 413.3 285 70.9
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 5.8e-109 398.3 270 69.3
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 1.7e-108 396.7 225 83.6
AagrBONN_evm.TU.Sc2ySwM_228.2787 Anthoceros agrestis HOM05D004164 ORTHO05D004891 5.1e-105 385.2 325 58.2
Mapoly0043s0005 Marchantia polymorpha HOM05D004164 ORTHO05D004891 1.1e-104 384.0 333 58.6
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 4.3e-104 382.1 329 59.0
Nn3g21861 Nelumbo nucifera HOM05D004164 ORTHO05D004891 5.3e-102 375.2 329 58.1
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 5.5e-99 365.2 223 78.5
Nn4g25427 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.6e-98 363.6 330 54.5
PSO063G3797 Papaver somniferum HOM05D004164 ORTHO05D004891 7.9e-98 361.3 330 53.6
PSO832G0925 Papaver somniferum HOM05D004164 ORTHO05D004891 1.8e-97 360.1 332 56.0
PSO782G1386 Papaver somniferum HOM05D004164 ORTHO05D004891 1.3e-95 354.0 333 55.0
PSO173G0010 Papaver somniferum HOM05D004164 ORTHO05D004891 3.7e-95 352.4 330 53.0
PSO210G6256 Papaver somniferum HOM05D004164 ORTHO05D004891 3.7e-95 352.4 330 54.2
PSO832G1962 Papaver somniferum HOM05D004164 ORTHO05D004891 8.2e-95 351.3 329 54.7
Prupe.8G063800 Prunus persica HOM05D004164 ORTHO05D004891 9.0e-94 347.8 219 79.5
PSO507G0030 Papaver somniferum HOM05D004164 ORTHO05D004891 2.2e-92 343.2 330 53.6
PSO832G4194 Papaver somniferum HOM05D004164 ORTHO05D004891 2.9e-92 342.8 329 52.6
Aqoxy2G03733 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 8.5e-92 341.3 326 53.4
PSO832G2156 Papaver somniferum HOM05D004164 ORTHO05D004891 8.5e-92 341.3 329 52.3
PSO507G0017 Papaver somniferum HOM05D004164 ORTHO05D004891 5.5e-91 338.6 329 53.2
PSO210G5660 Papaver somniferum HOM05D004164 ORTHO05D004891 1.4e-89 334.0 330 51.5
PSO761G0590 Papaver somniferum HOM05D004164 ORTHO05D004891 2.0e-88 330.1 330 50.6
MBI18_g40410_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.8e-87 326.2 329 51.4
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 2.6e-85 319.7 233 69.1
PSO761G0549 Papaver somniferum HOM05D004164 ORTHO05D004891 3.0e-81 306.2 330 49.1
PSO781G0333 Papaver somniferum HOM05D004164 ORTHO05D004891 3.9e-81 305.8 329 48.9
MBI18_g36466_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 7.4e-80 301.6 326 48.2
PSO761G0410 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-79 298.9 330 47.9
PSO173G0166 Papaver somniferum HOM05D004164 ORTHO05D004891 1.1e-70 271.2 264 52.3
Actinidia26597 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.8e-65 253.8 148 81.8
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 9.8e-64 248.1 148 77.7
PSO507G0015 Papaver somniferum HOM05D004164 ORTHO05D004891 3.1e-62 243.0 216 56.5
FAN24G1884 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.7e-58 229.9 181 66.3
FvH4_2g11900 Fragaria vesca HOM05D004164 ORTHO05D004891 2.3e-57 226.9 141 74.5
TPR.G9891 Trifolium pratense HOM05D004164 ORTHO05D004891 1.2e-56 224.6 173 68.8
PSO541G2216 Papaver somniferum HOM05D004164 ORTHO05D004891 2.8e-50 203.4 195 51.3
PSO646G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 6.1e-50 202.2 177 53.1
TPR.G11284 Trifolium pratense HOM05D004164 ORTHO05D004891 2.3e-49 200.3 126 76.2
MD05G1043700 Malus domestica HOM05D004164 ORTHO05D004891 8.9e-49 198.4 214 52.3
Nn2g14913 Nelumbo nucifera HOM05D004164 ORTHO05D004891 1.2e-48 198.0 326 39.3
FvH4_2g11890 Fragaria vesca HOM05D004164 ORTHO05D004891 1.7e-44 184.1 136 68.4
FAN24G2526 Fragaria x ananassa HOM05D004164 ORTHO05D004891 5.0e-44 182.6 105 80.0
TPR.G19821 Trifolium pratense HOM05D004164 ORTHO05D004891 1.0e-41 174.9 158 58.2
Pp3s30_626 Physcomitrium patens HOM05D004164 ORTHO05D004891 5.6e-35 152.5 366 31.1
PRCOL_00000119 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 3.2e-30 136.7 349 29.5
Cfa026765 Carpinus fangiana HOM05D004164 ORTHO05D004891 2.3e-28 130.6 351 29.3
MD10G1050600 Malus domestica HOM05D004164 ORTHO05D004891 1.6e-26 124.4 292 30.8
Prupe.8G063900 Prunus persica HOM05D004164 ORTHO05D004891 2.1e-26 124.0 79 69.6
TPR.G10092 Trifolium pratense HOM05D004164 ORTHO05D004891 6.2e-26 122.5 69 73.9
Cfa023826 Carpinus fangiana HOM05D004164 ORTHO05D004891 8.1e-26 122.1 332 29.5
PSO400G0001 Papaver somniferum HOM05D004164 ORTHO05D004891 2.7e-21 107.1 98 55.1
Hma1.2p1_0784F.1_g217070 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 6.6e-20 102.4 70 70.0
Cfa026889 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.1e-19 101.7 365 29.3
MCO10G397 Micromonas commoda HOM05D004164 ORTHO05D004891 1.6e-18 97.8 327 30.0
CSS0002492 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.1e-18 97.4 60 80.0
COL.COLO4_01173 Corchorus olitorius HOM05D004164 ORTHO05D004891 4.0e-17 93.2 283 29.7
Nn5g30063 Nelumbo nucifera HOM05D004164 ORTHO05D004891 6.9e-17 92.4 56 82.1
TAR019G0004 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.7e-15 87.8 99 50.5
TAR622G0536 Trochodendron aralioides HOM05D004164 ORTHO05D000005 7.1e-14 82.4 89 48.3
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.7e-13 80.5 45 77.8
Zm00001eb051650 Zea mays HOM05D004164 ORTHO05D004891 6.0e-13 79.3 92 47.8
MBI18_g38521_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 6.6e-12 75.9 147 35.4
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 8.7e-12 75.5 46 76.1
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.1e-11 75.1 47 76.6
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 3.3e-11 73.6 50 70.0
PRCOL_00002754 Prasinoderma coloniale HOM05D004164 ORTHO05D004891 2.0e-08 64.3 136 33.8


User provided reference genes

Program Settings